Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0132
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical ...    35   0.062
AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    31   0.76 
AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical ...    31   0.76 
Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC006617-8|AAF39772.2|  309|Caenorhabditis elegans Hypothetical
           protein C39B5.9 protein.
          Length = 309

 Score = 34.7 bits (76), Expect = 0.062
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -3

Query: 260 YQRYFSFVEHLHNFSHWHGVFFKYDKFIRIADNLVLTSGEFSCEPVQLEEFHPVXL 93
           + +Y   + HL NF  +  + F     I+I D+L+  S   SCE + + E HP+ L
Sbjct: 207 HSKYIEHLFHLQNFYIYEMIDFSTQAAIKIRDDLMRRSTFESCE-IYIREAHPIEL 261


>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 677 FTYLILFFLNHNSYT*SFYIFFGYYGCKIHQ 585
           F++  ++F NHNS +  F++ F    C+ HQ
Sbjct: 16  FSFSRIYFFNHNSVSFQFFLVFQKLTCRSHQ 46


>AF025463-7|AAB71007.1| 1210|Caenorhabditis elegans Hypothetical
           protein K10B4.1 protein.
          Length = 1210

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
 Frame = +3

Query: 21  VASDAVVKIFLAPKFDDNGIPLTLEXNWMKFFELDWFTTKLTAGQNKIIRNSNEFVIF-- 194
           +A + V    L P F   G  + L+    KF +  W+T KLT  Q + ++ ++   +   
Sbjct: 452 IAENPVYGSLLGPTF---GCIMALQFQKTKFGDTYWYTNKLTEDQLEEVKKTSISAMMCR 508

Query: 195 -KEDSVPMTEIMKMLDE-GKVPLICRKS 272
            ++ S+   ++ K  D    +P+ C  S
Sbjct: 509 HQKTSIIQKDVFKAADNFQNIPIFCNSS 536


>Z81506-7|CAB04127.1|  676|Caenorhabditis elegans Hypothetical
           protein F16H6.9 protein.
          Length = 676

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 482 DIFIYHEGEGSLTNSIFLRMTHSLMLFQKIKF 577
           DIF+Y   EG+++   F++   SL+  Q++ F
Sbjct: 593 DIFVYKSCEGNVSKEDFIKHIMSLLKTQRVDF 624


>Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical
           protein T05C12.1 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -1

Query: 376 VLAFVVEWIDENKELEWE 323
           +LA+ V+++D+N E EW+
Sbjct: 304 ILAYCVKFVDDNAEFEWD 321


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,314,135
Number of Sequences: 27780
Number of extensions: 342451
Number of successful extensions: 846
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)