Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   0.92 
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    24   0.92 
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    23   1.6  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   2.8  
AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory recept...    22   3.7  
AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory recept...    22   3.7  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.5  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 173 EKILYANQGTVFYPQVCYYFLFLQILNNCTYNNLPKLEEKKTE 301
           E ++  N   +F P +C     L+IL   T   L  LE K+T+
Sbjct: 269 EMVVPQNFHDIFLPLLCILTNTLEILITVTVCELTILEYKRTK 311


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 0.92
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 173 EKILYANQGTVFYPQVCYYFLFLQILNNCTYNNLPKLEEKKTE 301
           E ++  N   +F P +C     L+IL   T   L  LE K+T+
Sbjct: 94  EMVVPQNFHDIFLPLLCILTNTLEILITVTVCELTILEYKRTK 136


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +2

Query: 83  LKVYFENHFFLINCLITSTFQIFYRQTNL 169
           +++YF+ ++    C+I   F+  YR  NL
Sbjct: 150 VQLYFQFYYTYFLCVIVCIFRGKYRNINL 178


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 260 TYNNLPKLEEKKTEYN 307
           T+ NLP+LE+    YN
Sbjct: 159 TFQNLPELEDLDLAYN 174


>AM292366-1|CAL23178.2|  379|Tribolium castaneum gustatory receptor
           candidate 45 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 363 CLHFYSNNIHDNYSELKSLLV 425
           CL+F +NN+     E K  L+
Sbjct: 257 CLNFITNNLKSENEEFKEKLL 277


>AM292329-1|CAL23141.2|  379|Tribolium castaneum gustatory receptor
           candidate 8 protein.
          Length = 379

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 363 CLHFYSNNIHDNYSELKSLLV 425
           CL+F +NN+     E K  L+
Sbjct: 257 CLNFITNNLKSENEEFKEKLL 277


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 104  GSRNKPLNVITLLFNVRKNYVGST 33
            G  NKP+  +   F  R   +GST
Sbjct: 1381 GGENKPIFYLDEAFQRRVTQIGST 1404


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 104  GSRNKPLNVITLLFNVRKNYVGST 33
            G  NKP+  +   F  R   +GST
Sbjct: 1381 GGENKPIFYLDEAFQRRVTQIGST 1404


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,045
Number of Sequences: 336
Number of extensions: 2513
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)