Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    28   0.72 
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   2.9  
SPBC32H8.09 |||WD repeat protein, human WDR8 family|Schizosaccha...    25   5.1  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    25   8.9  
SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomy...    25   8.9  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.9  

>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 179 ILYANQGTVFYPQVCYYFLFLQILNNCTY-NNLPKLEEKKTEY 304
           I +  QG  F+  +C++FL L I  +  Y +N  KL E   +Y
Sbjct: 153 IRFCEQGYSFFYYLCFWFLGLYIYRSSNYWSNEEKLFEDYPQY 195


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +1

Query: 94  FREPFLFNKLS--YNKYFSNI 150
           FR+PFLF+KLS  +  +FS I
Sbjct: 131 FRKPFLFDKLSPYFTHFFSEI 151


>SPBC32H8.09 |||WD repeat protein, human WDR8
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 32  LWNLRNSS*H*TIT**HLKVYFENH 106
           LWNL+N   H  +   H  VYFE H
Sbjct: 346 LWNLQNKKLHTVLIQKHHIVYFEWH 370


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 158  QTNLSEKILYANQGTVFYPQV-CYYFLFLQILNNCT 262
            Q N + KI        FY  V C++F FL ++NN T
Sbjct: 1144 QLNSARKIFIGYMLDGFYQSVICFFFSFL-VINNVT 1178


>SPCC1450.10c |||iron hydrogenase large subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 538

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 435 LKHFKKKKTTEIIYLSIN 488
           LKH + +K+ EI+Y+S++
Sbjct: 88  LKHLESRKSQEILYVSLS 105


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 13/66 (19%), Positives = 30/66 (45%)
 Frame = +2

Query: 29   VLWNLRNSS*H*TIT**HLKVYFENHFFLINCLITSTFQIFYRQTNLSEKILYANQGTVF 208
            V+ NL +S    ++   H+  + +  FF     +    ++F R +N++E + +       
Sbjct: 2355 VMMNLISSCYKFSVDLQHIMNFTKQRFFTTFYSLLDQTKLFTRSSNITESLSFKELCNYL 2414

Query: 209  YPQVCY 226
              ++CY
Sbjct: 2415 KKKICY 2420


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,742
Number of Sequences: 5004
Number of extensions: 40537
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)