Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0882 - 8663006-8663068,8663260-8663328,8663410-8663515,866...    28   5.1  

>08_01_0882 -
           8663006-8663068,8663260-8663328,8663410-8663515,
           8663889-8663944,8664163-8664222,8664310-8664529,
           8664561-8664655,8664757-8664882,8664954-8665008,
           8666163-8666290
          Length = 325

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +3

Query: 159 RQIYLKKFFMLIKEQSSTHKYVIIFCFYKF*TTVRTIIFQN 281
           R IY K     + +Q+ T  ++++FC Y+F   V  I++++
Sbjct: 142 RNIYHKSLIFYL-QQNVTSFFIVLFCTYQFLPRVTGILYRS 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,533,049
Number of Sequences: 37544
Number of extensions: 175492
Number of successful extensions: 311
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)