Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)                    28   4.0  
SB_53989| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_29851| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_22143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 339 LVLKMICICLHFYSNNIHDNYSELKSLLVHSCLKHFKKKKTTEIIYL 479
           +V+ +   C+   +  +   +S   +++V + L  FK+KKTT +  L
Sbjct: 339 MVVTLAAKCVAHLATGLRKKFSAYSAMMVSAILDKFKEKKTTVVTAL 385


>SB_30676| Best HMM Match : DUF999 (HMM E-Value=6.7)
          Length = 310

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -1

Query: 158 VCKIFEKYLL*DNLLKRNGSRNKPLNVITLLFNVRKNYVGSTILK 24
           VC++ +   L D+ L + GS    L +++     RK YVG    K
Sbjct: 99  VCRVLQLMNLTDSQLSQRGSEKLELAILSFFEQFRKIYVGDQAQK 143


>SB_53989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 275 EDYCTYSCLKFVKTKNNNI 219
           EDY   +C K ++TKN NI
Sbjct: 15  EDYLDKNCAKIIQTKNGNI 33


>SB_29851| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 275 EDYCTYSCLKFVKTKNNNI 219
           EDY   +C K ++TKN NI
Sbjct: 128 EDYLDKNCAKIIQTKNGNI 146


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,483
Number of Sequences: 59808
Number of extensions: 246003
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)