Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical p...    32   0.28 
AF143149-1|AAD37915.1|  260|Caenorhabditis elegans R151.8B prote...    32   0.28 
AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical...    29   1.5  
Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical pr...    28   3.4  
U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    27   6.0  
U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine rece...    27   8.0  

>U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical
           protein R151.8 protein.
          Length = 731

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 366 LHFYSNNIHDNYSELKSLLVHS---CLKHFKKKKTT 464
           LHF  N +H+ Y ++ S    S    L HF+KKKTT
Sbjct: 691 LHFSVNEVHEKYHDMISSSQDSQDYILSHFQKKKTT 726


>AF143149-1|AAD37915.1|  260|Caenorhabditis elegans R151.8B protein
           protein.
          Length = 260

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 366 LHFYSNNIHDNYSELKSLLVHS---CLKHFKKKKTT 464
           LHF  N +H+ Y ++ S    S    L HF+KKKTT
Sbjct: 220 LHFSVNEVHEKYHDMISSSQDSQDYILSHFQKKKTT 255


>AF026215-10|AAB71320.2|  971|Caenorhabditis elegans Hypothetical
           protein F09G2.1 protein.
          Length = 971

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
 Frame = -1

Query: 284 LVLEDYCTYSCLKFVKTKNNNILVGRRL--FLD*HKEF----FQINLSVCKIFEKYLL*D 123
           LVLE  C    L++VK K  ++ + R +   +D HKEF    +QI   +  + +K ++  
Sbjct: 619 LVLEHCCHRDLLRYVKNKKCDLEISRSVDDTIDSHKEFLNFAWQITQGMRFLVDKRIIHR 678

Query: 122 NLLKRN 105
           +L  RN
Sbjct: 679 DLAARN 684


>Z81111-4|CAB03264.1|  415|Caenorhabditis elegans Hypothetical
           protein T01G5.4 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 152 YRQTNLSEKILYANQGTVFYPQVCYYFLFLQILN 253
           +RQ  + E IL+ANQ    +  V   FLF  ++N
Sbjct: 258 FRQNEILELILFANQSLSSFGSVTPLFLFYGLIN 291


>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 315 SINCFKTPLVLKMICICLHFYSNNIHDNYSELKSLL 422
           +I+CFK      +   CL FY++ +H N ++L  +L
Sbjct: 128 NIHCFKFHKFESLKAGCLFFYTDFLHFNSNDLHKML 163


>U64833-9|AAS47683.1|  312|Caenorhabditis elegans Serpentine
           receptor, class x protein115 protein.
          Length = 312

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +1

Query: 55  LTLNNNVITFKGLFREPFLFNKLSYNKYFSNILQTDKFI*KNSLC*SRNS-LLPTSMLLF 231
           +TLN  VI+   +FRE   FNK+  NK  +N+     F+   + C   N   LP    +F
Sbjct: 20  ITLNGMVIS--RMFREREGFNKICVNKSVANVHIATAFLIWAAPCAYLNDYYLPQQFNVF 77

Query: 232 F 234
           F
Sbjct: 78  F 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,878,243
Number of Sequences: 27780
Number of extensions: 216486
Number of successful extensions: 532
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)