Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.26 
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   5.7  
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   10.0 

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.8 bits (54), Expect = 0.26
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +3

Query: 219 YVIIFCFYKF*TTVRTIIFQNXXXXXPNTTNESINCFKTPLV 344
           Y++  C Y F TT+  I++        N   ++I C KT ++
Sbjct: 310 YILSGCLYYFSTTINPILYNLMSIKYRNAFKQTI-CCKTRII 350


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/36 (27%), Positives = 15/36 (41%)
 Frame = +3

Query: 219 YVIIFCFYKF*TTVRTIIFQNXXXXXPNTTNESINC 326
           Y +  C Y F TT+  I++        N   E+  C
Sbjct: 298 YPLTGCLYYFSTTINPILYNVMSAKYRNAFKETCRC 333


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 TNLSEKILYANQGTVFYPQVCYYFLFLQ 244
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 TNLSEKILYANQGTVFYPQVCYYFLFLQ 244
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 TNLSEKILYANQGTVFYPQVCYYFLFLQ 244
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 TNLSEKILYANQGTVFYPQVCYYFLFLQ 244
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +2

Query: 161 TNLSEKILYANQGTVFYPQVCYYFLFLQ 244
           ++LS    Y+N     Y Q+CY   +++
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = +3

Query: 330 KTPLVLKMICICL 368
           KT L++  ICIC+
Sbjct: 2   KTILIISAICICV 14


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 161 TNLSEKILYANQGTVFYPQVCY 226
           ++LS    Y+N     Y Q+CY
Sbjct: 83  SSLSNNYNYSNYNNNNYKQLCY 104


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,835
Number of Sequences: 438
Number of extensions: 2865
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)