Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0127
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P4...    33   0.086
At4g28640.1 68417.m04094 auxin-responsive protein / indoleacetic...    29   1.9  
At5g07610.1 68418.m00872 F-box family protein similar to unknown...    28   4.3  
At1g51950.1 68414.m05856 auxin-responsive protein / indoleacetic...    27   9.9  

>At4g18130.1 68417.m02695 phytochrome E (PHYE) identical to SP|P42498
            Phytochrome E {Arabidopsis thaliana}
          Length = 1112

 Score = 33.5 bits (73), Expect = 0.086
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +2

Query: 131  TSTFQIFYRQTNLSEKILYANQGTVFYPQVCYYFLFLQILNNCTYNNLPKLEEKKTEYNE 310
            +S  + F ++    E  L AN+ T    +V   F FLQI+N  +  + P+L+E     NE
Sbjct: 815  SSLVEFFNKEGKYIEASLTANKSTNIEGKVIRCFFFLQIINKESGLSCPELKESAQSLNE 874

Query: 311  *IY 319
              Y
Sbjct: 875  LTY 877


>At4g28640.1 68417.m04094 auxin-responsive protein / indoleacetic
           acid-induced protein 11 (IAA11) identical to SP|Q38829
           Auxin-responsive protein IAA11 (Indoleacetic
           acid-induced protein 11) {Arabidopsis thaliana}
          Length = 246

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 15/57 (26%), Positives = 32/57 (56%)
 Frame = -1

Query: 245 FVKTKNNNILVGRRLFLD*HKEFFQINLSVCKIFEKYLL*DNLLKRNGSRNKPLNVI 75
           FVK   + I +GR++ L+ HK +  ++ ++ ++F K  L    L+ +G    P+ ++
Sbjct: 138 FVKVTMDGIPIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHMETPVKIL 194


>At5g07610.1 68418.m00872 F-box family protein similar to unknown
           protein (emb|CAB85517.1)
          Length = 420

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +3

Query: 144 KYFTDRQIYLKKFFMLIKEQSSTHKYVII 230
           +Y+TDR+IY       +KE++    Y+++
Sbjct: 342 EYYTDRRIYAFSVIGFVKEETDAASYILL 370


>At1g51950.1 68414.m05856 auxin-responsive protein / indoleacetic
           acid-induced protein 18 (IAA18) identical to
           SP|O24408|AXII_ARATH Auxin-responsive protein IAA18
           (Indoleacetic acid-induced protein 18) {Arabidopsis
           thaliana}
          Length = 267

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 245 FVKTKNNNILVGRRLFLD*HKEFFQINLSVCKIFEKYL 132
           FVK     + +GR++ L  H  + Q++ +V K+F   L
Sbjct: 151 FVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLL 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,640
Number of Sequences: 28952
Number of extensions: 176723
Number of successful extensions: 386
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)