Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0125
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.62 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.1  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    27   1.9  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   1.9  
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.5  
SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protei...    26   3.3  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   3.3  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   4.4  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   5.8  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   5.8  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   5.8  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   5.8  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    25   7.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    25   7.6  
SPBC16E9.06c |uvi31||BolA domain UV inducedv protein Uvi31|Schiz...    25   7.6  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    25   7.6  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.62
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 438 SGCDRCRVWSMFVRYVRFSELVFYIMRPQKLYIF 539
           +GC +  VW  +VR+V F E          LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 461 DPAPVASASRPNPTRPGPQSQSLFRSYGSNLPTS 360
           +PAPV+    P PTR  P+    FRS     P+S
Sbjct: 41  EPAPVSKKPLPPPTRRLPRKPLPFRSTSLQPPSS 74


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -2

Query: 461 DPAPVASASRPNP---TRPGPQSQSLFRSYGSNLPTSL 357
           +PA  ASAS PNP   TR G +      + GS+ P SL
Sbjct: 250 EPASKASASSPNPQSGTRLGTKESVAPNNEGSSNPPSL 287


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
 Frame = -3

Query: 448 SHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGA 284
           SHP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G+
Sbjct: 253 SHPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGS 312

Query: 283 T-SPRTSLT*ISRSAESIRTP 224
           T SP+ +   I +  +SI TP
Sbjct: 313 TVSPKYT---IQQYVQSIGTP 330


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +3

Query: 165 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 290
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPCC31H12.07 |sec231|sec23a, SPCC5E4.01|GTPase activating protein
           Sec23a|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 21/69 (30%), Positives = 28/69 (40%)
 Frame = -2

Query: 488 TNITHEHRPDPAPVASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPA 309
           TNI  + +PD  PVA+  RP     G           S  P S  +I+L   G S   P 
Sbjct: 237 TNILEQLQPDSWPVANDRRPQRC-TGTALNISVSMMESVCPNSGGHIMLFAGGPSTVGPG 295

Query: 308 ADMGTNRRD 282
             + T  R+
Sbjct: 296 TVVSTELRE 304


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 482 ITHEHRPDPAPVASASRPNP-TRPGPQSQSLF 390
           ++H   P PAP  S S+P   ++P PQ  S F
Sbjct: 289 LSHSSVPSPAPPRSVSQPTYFSQPMPQFSSSF 320


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -2

Query: 278 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 147
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 76  RVFNGVTQSGLKTPPRGPGRV 138
           RVF+G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 363 FPYLHYSID*RLFTLETCCGYGYEPARHL 277
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 76  RVFNGVTQSGLKTPPRGPGRV 138
           RVF+G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -1

Query: 264 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 103
           +P  + P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 12  PVPIPEPGSGTVSIIVPSSLKTSVQRGNPKWPEDAAERSGKSFLFCLSVRVPW 170
           PV +   G  TV+   P+S+  +    +P+ P  A+       + CL +   W
Sbjct: 132 PVSLEVRGRNTVTFYGPTSIFGTSFTSSPRPPPSASIEDTYPIIHCLQLFFKW 184


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 21/70 (30%), Positives = 33/70 (47%)
 Frame = -2

Query: 377 SNLPTSLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFKVRREYPDTAANAVLFAF 198
           S   TSL+      R S+P R   D G+++   +TYIPH   K   ++     +A     
Sbjct: 212 SEKDTSLSRRSSRGRSSAPKR-RKDSGSSKTT-ATYIPHNPSKKSSQHLPLLPDASFELE 269

Query: 197 RTISPFYRIP 168
           R++S  Y+ P
Sbjct: 270 RSVSRSYQSP 279


>SPBC16E9.06c |uvi31||BolA domain UV inducedv protein
           Uvi31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 102

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -1

Query: 264 SPEFQGPQRVSGHRRKCGALR 202
           SPEF G  RV+ HR   G L+
Sbjct: 60  SPEFSGMSRVARHRLVYGLLK 80


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 345 NNVGKGSRQIGSVTSE*GLALRTGACRVWTGSGCD 449
           NNVG+G+R  G+ T   G+A    +C    G  CD
Sbjct: 452 NNVGEGARWDGTFTPNGGVA----SCSEKVGCRCD 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,859
Number of Sequences: 5004
Number of extensions: 55270
Number of successful extensions: 195
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)