Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0125
(561 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0479 + 17627605-17627839,17628965-17629107,17630018-176301... 34 0.067
05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980 33 0.16
06_01_1013 - 7931756-7935109 31 0.48
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.48
06_01_0350 + 2534422-2535615 31 0.83
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.1
06_01_0368 + 2645007-2645317,2645422-2645509,2648927-2649183,264... 30 1.1
08_02_0551 - 18535219-18536134,18536140-18536345 30 1.5
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.9
02_05_0313 - 27795152-27795268,27795476-27795515,27795773-277958... 29 1.9
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 29 1.9
12_02_0969 - 24936399-24936699,24936779-24936949,24937032-249378... 29 3.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 3.4
05_06_0098 + 25560158-25560925 29 3.4
06_03_1070 - 27351781-27351882,27352461-27352520,27353033-273531... 28 4.4
05_04_0127 - 18262499-18263104 28 4.4
01_06_0554 + 30179641-30179658,30179725-30180126,30180580-301808... 28 4.4
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 5.9
12_02_0096 - 13573612-13573632,13573846-13573884,13574160-135744... 28 5.9
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 28 5.9
09_02_0369 - 8012470-8013120 28 5.9
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 5.9
05_01_0608 + 5429901-5429982,5430610-5431058,5436758-5437183,543... 28 5.9
03_02_0816 + 11487811-11488708,11488835-11489235 28 5.9
03_02_0576 - 9587698-9588636 28 5.9
01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705 28 5.9
04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154 27 7.7
04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628 27 7.7
02_02_0590 - 11894721-11895188,11895684-11895851 27 7.7
>08_02_0479 +
17627605-17627839,17628965-17629107,17630018-17630137,
17630497-17630721
Length = 240
Score = 34.3 bits (75), Expect = 0.067
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -2
Query: 470 HRPDPAPVASASRPNPTRPGPQSQSLFR 387
HRP P+P A+A+ P+P P ++ LFR
Sbjct: 18 HRPRPSPYAAAAAPSPDAAAPPAELLFR 45
>05_05_0390 - 24593985-24595205,24595790-24595867,24596234-24596980
Length = 681
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -2
Query: 476 HEHRPDPAPVASASRPNPTRPGPQS 402
H HRPD APV A RP ++ GP S
Sbjct: 442 HFHRPDKAPVVDAIRPLGSQDGPMS 466
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 31.5 bits (68), Expect = 0.48
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 300 GYEPARHLHVHPSPEFQGPQRVSGHR 223
G+EP R + +HP+P+ + P R+ G +
Sbjct: 879 GWEPKRFITIHPTPKSKAPARILGSK 904
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.5 bits (68), Expect = 0.48
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -3
Query: 475 TNIDQTRH------RSHPLPVQTRHAPVLRANP 395
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 0.83
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -2
Query: 170 PWNSNAQAEKKTLPGPLGGVFRP 102
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 27 EPGSGTVSIIVPSSLKTSVQRGNPKWPEDAAERSGKSFLFCLSVRVPWNPIEGRY 191
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>06_01_0368 +
2645007-2645317,2645422-2645509,2648927-2649183,
2649453-2649504,2649527-2649838
Length = 339
Score = 30.3 bits (65), Expect = 1.1
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = -2
Query: 497 LAKTNITHEHRPDPA-PVASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 321
+A+ ++ + P P P +A P PT P P+ S+ SY + +L Y++L+ G+S
Sbjct: 187 VAQADVAPQRPPRPTGPRPAAHVPRPTPPSPRKVSVSGSY---VGLAL-YVVLAAAGTSS 242
Query: 320 WRPAAD 303
P D
Sbjct: 243 RGPPLD 248
>08_02_0551 - 18535219-18536134,18536140-18536345
Length = 373
Score = 29.9 bits (64), Expect = 1.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -2
Query: 470 HRPDPAPVASASRPNPTRPGPQS 402
H PDP PVA A RP T P P S
Sbjct: 40 HHPDPLPVA-APRPTSTSPRPTS 61
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -3
Query: 445 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 356
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>02_05_0313 -
27795152-27795268,27795476-27795515,27795773-27795873,
27796862-27796921,27797185-27797294,27797911-27798033,
27798148-27798271,27798585-27798642,27798713-27798841,
27799602-27799762
Length = 340
Score = 29.5 bits (63), Expect = 1.9
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Frame = -2
Query: 524 LRPHYIKY*L-AKTNITHEHRPDPAPVASASRPNPTR-----PG----PQSQSLFRSYGS 375
+R H KY L + N T EH P P P A+ P P + PG S S+ R+ G
Sbjct: 117 IRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNEPGYTIKADSSSMLRNSGM 176
Query: 374 NLPTS 360
N S
Sbjct: 177 NATVS 181
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 29.5 bits (63), Expect = 1.9
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -2
Query: 443 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 288
SAS P+P +P P S SL R+ S +Y G W A + R
Sbjct: 15 SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>12_02_0969 -
24936399-24936699,24936779-24936949,24937032-24937852,
24937946-24938407,24938486-24938890
Length = 719
Score = 28.7 bits (61), Expect = 3.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C ++ VP
Sbjct: 248 VHPTPRAQHDTNPSHHRSSCASIEVP 273
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 439 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 326
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>05_06_0098 + 25560158-25560925
Length = 255
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/60 (25%), Positives = 25/60 (41%)
Frame = -3
Query: 454 HRSHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 275
HR P P + P L +P + V I P PT F + + ++++ + T P
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90
>06_03_1070 -
27351781-27351882,27352461-27352520,27353033-27353142,
27353583-27353693,27353781-27353939,27354035-27354158,
27354755-27354812,27356656-27356933
Length = 333
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 524 LRPHYIKY*L-AKTNITHEHRPDPAPVASASRPNPTR 417
+R H KY L + N T EH P P P A+ P P +
Sbjct: 113 IRSHAQKYFLKVQKNGTGEHLPPPRPKRKAAHPYPQK 149
>05_04_0127 - 18262499-18263104
Length = 201
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = -2
Query: 494 AKTNITHEHRPDPAPVASASRPNPTRPGPQSQSLFRSYGSN 372
A N+ RP A+A++P P +++ +FR + +N
Sbjct: 26 AAMNVDWSPRPSDLAAAAAAKPRPPAAEDETERVFRKFDAN 66
>01_06_0554 +
30179641-30179658,30179725-30180126,30180580-30180892,
30180966-30181358,30181442-30182427
Length = 703
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +3
Query: 3 KGNPVPIPEPGSGTVSIIVPSSLKTSVQRGNPK-WPEDAAERSGKSFL 143
+G + IPE T +PSS K ++Q K WP + + G FL
Sbjct: 10 QGFLIHIPEVDHSTFDASLPSSAKGTLQNSEGKTWPVELEKLDGHVFL 57
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 5.9
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -1
Query: 477 ARTSTRPGTGRIRFPSKPDTPRSSE 403
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>12_02_0096 -
13573612-13573632,13573846-13573884,13574160-13574493,
13574660-13574830,13574913-13575730,13575812-13576114,
13576352-13577085,13577174-13577303
Length = 849
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -1
Query: 273 VHPSPEFQGPQRVSGHRRKCGALRVP 196
VHP+P Q S HR C + +VP
Sbjct: 348 VHPTPRAQHDASPSQHRSSCASTKVP 373
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 374 WIRNFGIRIGSEDRGVSGLDGKRMRPVPGLVDVRALCSF*RVSILYNAASKTV 532
W R G R+G ++ G+ R VPG+V R L + +V + KTV
Sbjct: 84 WERVVGHRVGGDEAA-----GEEEREVPGVVGCRMLAASGQVGCVLGKGGKTV 131
>09_02_0369 - 8012470-8013120
Length = 216
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 473 EHRPDPAPVASASRPNPTRP 414
+H P PAP A+A++P P P
Sbjct: 25 QHEPPPAPHAAATKPPPPPP 44
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -1
Query: 465 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 379
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>05_01_0608 +
5429901-5429982,5430610-5431058,5436758-5437183,
5437270-5437643,5437655-5438113,5438191-5438361,
5438442-5438760
Length = 759
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = -2
Query: 491 KTNITHEHRPDPAPVASASRPNPTRPGPQSQSL 393
K NI P PAP +SRP PTRP P SL
Sbjct: 401 KHNIEINITPRPAP---SSRPLPTRPHPTVVSL 430
>03_02_0816 + 11487811-11488708,11488835-11489235
Length = 432
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 473 EHRPDPAPVASASRPNPTRPGP 408
E P+P A+ RP PTRP P
Sbjct: 137 EESAPPSPAATTPRPLPTRPPP 158
>03_02_0576 - 9587698-9588636
Length = 312
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 467 RPDPAPVASASRPNPTRPGPQSQS 396
RP PAP A+A+RP P P +S
Sbjct: 231 RPPPAPAAAAARPPPPPAFPTRRS 254
>01_05_0408 + 21888898-21890181,21891289-21891984,21892167-21893705
Length = 1172
Score = 27.9 bits (59), Expect = 5.9
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1
Query: 291 PARHLHVHPSPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELER 154
P+ H +H S P+R RR+CGAL + + D + + R
Sbjct: 18 PSHHRLLHRSSLLPFPRRHHHRRRRCGALSIARASASAKDGVTVRR 63
>04_04_0759 - 27832340-27832480,27832568-27832593,27832759-27834154
Length = 520
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 306 GYGYEPARHLHVHPSPEFQGPQRVSGHRRKCGALRVP 196
G+ +EP L HPSP+ GPQ ++ G P
Sbjct: 23 GFRFEPKEELVEHPSPQ-PGPQAIASIASSDGEFSSP 58
>04_03_0211 - 12694217-12694318,12695119-12695256,12695470-12695628
Length = 132
Score = 27.5 bits (58), Expect = 7.7
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 331 ALHLGDLLRIWVRTGATSPRTSLT*ISRSAESIRTPPQMRCSSRSEP 191
A H G I VRT + TS + A SI TP + CS+ + P
Sbjct: 38 ARHTGPRSHIAVRTCHVNDETSRSTCRNGATSIATPSVVACSALALP 84
>02_02_0590 - 11894721-11895188,11895684-11895851
Length = 211
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +3
Query: 54 IVPSSLKTSVQRGNPKWPEDAAERSGKSFLFCL 152
++ S + V+ GN P +E+ G ++L CL
Sbjct: 70 VIQSPINLQVEHGNDLTPTSVSEKPGNNYLPCL 102
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,519,786
Number of Sequences: 37544
Number of extensions: 432360
Number of successful extensions: 1975
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1965
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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