Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0125
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.9  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   6.4  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   8.5  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 199 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 116
           SE   P+   HG R  RQ+ +   D  +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -3

Query: 310 LRIWVRTGATSPRTSLT*ISRSAESIRTP 224
           ++ W+  G T    +   +S+  +++RTP
Sbjct: 513 IKEWIERGTTKSMEAANIMSKLPKTVRTP 541


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -2

Query: 482 ITHEHRPDPAPVASASRPNPTRPGPQSQ 399
           ++ + +  P   ASA+ P+P  P  +SQ
Sbjct: 240 LSQQQQAAPQGAASANLPSPLYPWMRSQ 267


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 470 HRPDPAPVASASRPNPTRPGPQSQSL 393
           H PDP  V     P  T+P P S +L
Sbjct: 283 HHPDPGEV---DLPPETQPTPPSATL 305


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 176 RIPWNSNAQAEKKTLPGPLG 117
           +IPW+ N +A  K   G  G
Sbjct: 334 QIPWDKNVEALAKWANGQTG 353


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 130 PDLSAASSGHFGLP 89
           PDL+  S G  GLP
Sbjct: 336 PDLAGTSQGSAGLP 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,364
Number of Sequences: 438
Number of extensions: 4625
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)