Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0122
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0628 + 19389508-19389637,19389774-19389850,19390332-193904...    30   2.0  
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   2.7  
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305     29   2.7  
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    29   3.5  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   4.7  
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414     28   6.2  
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    28   8.2  

>10_08_0628 +
           19389508-19389637,19389774-19389850,19390332-19390438,
           19390545-19390626,19390702-19390814,19391023-19391086,
           19391192-19391266,19391691-19391807,19392131-19392199,
           19392319-19392411,19392733-19392835,19393040-19393164,
           19393317-19393366,19393477-19393543,19393663-19393742,
           19394038-19394166,19394274-19394340,19394429-19394512
          Length = 543

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 284 LAKTNITHEHDQTRHRRIRFPSKPD 210
           L +++  HEHDQ  H R+R P+ P+
Sbjct: 449 LYRSSTNHEHDQPPHLRLRDPTVPE 473


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 234 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 145
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
          Length = 196

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -1

Query: 232 SASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTNR 77
           SAS P+P +P P S SL R+       S +Y      G   W  A    + R
Sbjct: 15  SASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 234 HPLPVQTRHAPVLRANP 184
           H +PVQ  H+PVL+ NP
Sbjct: 340 HSVPVQKNHSPVLKTNP 356


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 228 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 115
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
          Length = 520

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 142 YIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 17
           + +L+ RG  P +PAA     RRD   ++P  + Q P    G
Sbjct: 28  HAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 253 TRPGTGASASRPNPTRPGPQSQSLFRSY 170
           TRPG    A+  N T  GPQ   +FR +
Sbjct: 905 TRPGKKLMATTANRTSKGPQDNRVFREH 932


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,354,839
Number of Sequences: 37544
Number of extensions: 503112
Number of successful extensions: 1738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)