Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0122
         (700 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for IM...    30   9.1  
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.             30   9.1  
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro...    30   9.1  
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro...    30   9.1  
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.     30   9.1  

>BC009062-1|AAH09062.1|  198|Homo sapiens Unknown (protein for
           IMAGE:3875076) protein.
          Length = 198

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = -1

Query: 394 GRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNMTRPGTGASASRPN 215
           GRP    P P +  RR S  S    +   ++   +++S   +  ++ +   + +S+S P+
Sbjct: 39  GRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 96

Query: 214 PTRPGPQS 191
           P +PGPQ+
Sbjct: 97  PAKPGPQA 104


>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
          Length = 1791

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = -1

Query: 394  GRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNMTRPGTGASASRPN 215
            GRP    P P +  RR S  S    +   ++   +++S   +  ++ +   + +S+S P+
Sbjct: 1625 GRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 1682

Query: 214  PTRPGPQS 191
            P +PGPQ+
Sbjct: 1683 PAKPGPQA 1690


>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
          Length = 2752

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = -1

Query: 394  GRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNMTRPGTGASASRPN 215
            GRP    P P +  RR S  S    +   ++   +++S   +  ++ +   + +S+S P+
Sbjct: 2593 GRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650

Query: 214  PTRPGPQS 191
            P +PGPQ+
Sbjct: 2651 PAKPGPQA 2658


>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein protein.
          Length = 1275

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = -1

Query: 394  GRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNMTRPGTGASASRPN 215
            GRP    P P +  RR S  S    +   ++   +++S   +  ++ +   + +S+S P+
Sbjct: 1116 GRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 1173

Query: 214  PTRPGPQS 191
            P +PGPQ+
Sbjct: 1174 PAKPGPQA 1181


>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
          Length = 2800

 Score = 29.9 bits (64), Expect = 9.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = -1

Query: 394  GRPENAGPDPVRNVRRFSRVSY*IYTVFEAALY*NTNSLKRT*RTNMTRPGTGASASRPN 215
            GRP    P P +  RR S  S    +   ++   +++S   +  ++ +   + +S+S P+
Sbjct: 2641 GRPPE--PTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2698

Query: 214  PTRPGPQS 191
            P +PGPQ+
Sbjct: 2699 PAKPGPQA 2706


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,045,485
Number of Sequences: 237096
Number of extensions: 2554272
Number of successful extensions: 7392
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7384
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)