Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0122
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 31 1.0
Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical pr... 29 3.2
U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile (un... 29 3.2
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 29 3.2
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 5.6
Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.4
U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile (un... 28 7.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.4
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -1
Query: 229 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 77
A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = -1
Query: 229 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTNR 77
A P P+ P P ++ +S NLP S+ + R G SP W P A TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461
>Z81119-8|CAB03340.1| 504|Caenorhabditis elegans Hypothetical
protein T10H4.10 protein.
Length = 504
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +3
Query: 333 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 473
D +L R G +G IF VR RF++ R D++ PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246
>U28971-1|AAA68376.2| 551|Caenorhabditis elegans Egg sterile
(unfertilizable) protein1 protein.
Length = 551
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = +1
Query: 490 ARTRGIHCLI-KTKHCDGPRGC*RNVISAQCSECQ 591
A T +H +I +K CDG R C C ECQ
Sbjct: 129 ACTGAVHMVIPSSKRCDGRRDCEDGSDEENCKECQ 163
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 414 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGNPLSN*NKALRWPSRVLTQCDFCPVL 581
++ R +F + H + PP G++R D GN + W +V++ DF +L
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGNDMD-------WCMQVISSDDFREIL 459
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 241 TGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 110
T A +P + P +Q LF S+G LP I + SSP
Sbjct: 11 TMAITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>Z83220-4|CAC42264.1| 617|Caenorhabditis elegans Hypothetical
protein C34B7.4 protein.
Length = 617
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 266 THEHDQTRHRRIRFPSKPDTPRSSEPI 186
T ++ + +R PS DTP SSEP+
Sbjct: 34 TPSSSSSKRKNLRKPSTDDTPSSSEPL 60
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 508 HCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 618
HC+ + K CDG + C QCS+ + AG
Sbjct: 274 HCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
>U00035-3|AAA50645.1| 548|Caenorhabditis elegans Egg sterile
(unfertilizable) protein2 protein.
Length = 548
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/54 (25%), Positives = 21/54 (38%)
Frame = +1
Query: 463 RRSTVSSELARTRGIHCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAGKR 624
+ V S + T CL ++ CDG C C +C + SA K+
Sbjct: 415 KECVVESSIQFTCDNKCLESSRRCDGVWDCEDKSDEKGCDKCPSRSFKCSADKK 468
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 508 HCLIKTKHCDGPRGC*RNVISAQCSECQREEIQASAG 618
HC+ + K CDG + C QCS+ + AG
Sbjct: 274 HCIDQLKLCDGSKDCADGADEQQCSQNLCPSLGCQAG 310
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,049,277
Number of Sequences: 27780
Number of extensions: 383185
Number of successful extensions: 1205
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1203
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -