Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0121
         (601 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   1.6  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   2.8  
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...    26   3.7  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.8  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   8.5  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.5  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   8.5  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 581 ARKIRGRPENAGPDPVRNVRRFSR 510
           AR I GRPEN G   ++N+ R S+
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSK 237


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = -3

Query: 599 KPTRLTARKIRGRPENAGPDPVRNVRRFSRGHIKYIQFLRPHYIKILTR*NEHN 438
           KP+R TA K + + ++ GP+  R +  F+      + F +   I I+ R   H+
Sbjct: 355 KPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQKGDIIDIVERSGSHD 408


>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
 Frame = -3

Query: 512 RGHIKYIQFLRPHYIKILTR*NEHNART---STRPGTGASASRPNP---TRPGPQSQSLF 351
           R H K I FL    I  L    E +A        P + ASAS PNP   TR G +     
Sbjct: 217 RIHGKEIPFLGESEIPKLLANVEPSANAHGLGIEPASKASASSPNPQSGTRLGTKESVAP 276

Query: 350 RSYGSNLPTSL 318
            + GS+ P SL
Sbjct: 277 NNEGSSNPPSL 287


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 178 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 41
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 37  RVFDGVTQSGLKTPPRGPGRV 99
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
 Frame = -1

Query: 439 THEHRPDPAPAHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIW 260
           TH  RP P  + PL V+++  P   AN  +    P      P      EA  +G  L   
Sbjct: 591 THSSRPTPNASSPLDVRSKQKP-SSANSNAPTPAPTVNTTNPESSTN-EATSVGPAL--- 645

Query: 259 VRPARHLHVHPS-PEFSRSAESIRTPP 182
             P++  +VH S  E     +S ++ P
Sbjct: 646 -EPSQGANVHKSDSELDNQNQSGKSNP 671


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 37  RVFDGVTQSGLKTPPRGPGRV 99
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,191
Number of Sequences: 5004
Number of extensions: 56532
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)