Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0121
(601 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical... 29 3.3
AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine re... 29 3.3
AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein. 28 4.4
AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical... 28 4.4
AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical ... 28 4.4
AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical ... 28 4.4
AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical ... 28 4.4
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 28 4.4
AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical ... 28 4.4
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr... 28 5.9
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p... 28 5.9
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 28 5.9
Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical pr... 27 7.7
X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin pr... 27 7.7
U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory ... 27 7.7
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 7.7
>AL032637-15|CAA21616.2| 370|Caenorhabditis elegans Hypothetical
protein Y43F8C.16 protein.
Length = 370
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 431 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLT 315
TST P T S + P P+ P S SNL ++LT
Sbjct: 297 TSTVPSTTTSTTTPKPSSPSTAEASTTPVLTSNLTSALT 335
>AC006655-1|AAF39875.1| 391|Caenorhabditis elegans Serpentine
receptor, class w protein6 protein.
Length = 391
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -3
Query: 587 LTARKIRGRPENAGPDPVRNVRRFSRGHIKYIQFLRPHYIKILTR*NEH 441
+T RKIR N DP ++ R+ G + FL +++ L EH
Sbjct: 1 MTTRKIRPTTTNPKDDPDYDLERYYYGDYTHRNFLTDFFLRYLEFSGEH 49
>AF063023-1|AAD20441.1| 1666|Caenorhabditis elegans AF-6 protein.
Length = 1666
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -3
Query: 386 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTTGATSPRTSLT*IFKV 207
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1220 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1277
Query: 206 RREYPDTAANAVLFAFRTISPFYRIP 129
R D N+ L A T + YRIP
Sbjct: 1278 HRALNDLELNSPL-ARSTPNEEYRIP 1302
>AF022971-12|AAG23974.3| 229|Caenorhabditis elegans Hypothetical
protein C31B8.1 protein.
Length = 229
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 413 TGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 282
T A +P + P +Q LF S+G LP I + SSP
Sbjct: 11 TMAITRSKSPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54
>AF003135-5|AAK18990.1| 678|Caenorhabditis elegans Hypothetical
protein W03F11.6b protein.
Length = 678
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -3
Query: 386 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTTGATSPRTSLT*IFKV 207
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 238 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 295
Query: 206 RREYPDTAANAVLFAFRTISPFYRIP 129
R D N+ L A T + YRIP
Sbjct: 296 HRALNDLELNSPL-ARSTPNEEYRIP 320
>AF003135-2|AAO38588.1| 1419|Caenorhabditis elegans Hypothetical
protein W03F11.6c protein.
Length = 1419
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -3
Query: 386 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTTGATSPRTSLT*IFKV 207
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1218 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1275
Query: 206 RREYPDTAANAVLFAFRTISPFYRIP 129
R D N+ L A T + YRIP
Sbjct: 1276 HRALNDLELNSPL-ARSTPNEEYRIP 1300
>AF003135-1|AAK18989.1| 1658|Caenorhabditis elegans Hypothetical
protein W03F11.6a protein.
Length = 1658
Score = 28.3 bits (60), Expect = 4.4
Identities = 26/86 (30%), Positives = 34/86 (39%)
Frame = -3
Query: 386 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTTGATSPRTSLT*IFKV 207
PTRP QS S R + P S Y T S+ + P + G S + +
Sbjct: 1218 PTRPSAQSPSALRKAAAASPVSNLY--RPTSASNLFAPPRNSGGLVGYSSNAARESTQDI 1275
Query: 206 RREYPDTAANAVLFAFRTISPFYRIP 129
R D N+ L A T + YRIP
Sbjct: 1276 HRALNDLELNSPL-ARSTPNEEYRIP 1300
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Frame = -1
Query: 439 THEHRPDPAPA---HPLPVQTRHAPVLRANP 356
+HEH P PAPA P PVQ +A P
Sbjct: 330 SHEHSPSPAPAPVSSPTPVQQYQQSYSQAQP 360
>AC006797-1|AAF60743.1| 1079|Caenorhabditis elegans Hypothetical
protein Y51B11A.1 protein.
Length = 1079
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 431 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLP--TSLTYIILSTRGSSPWRPAADMG 258
TST P + ++ T P++ S SN P T+ T +T P + +
Sbjct: 659 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQ 718
Query: 257 TTGATSPRTSLT 222
TT T+P T+ T
Sbjct: 719 TTTTTAPETTST 730
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Frame = -3
Query: 431 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLP--TSLTYIILSTRGSSPWRPAADMG 258
TST P + ++ T P++ S SN P T+ T +T P + +
Sbjct: 751 TSTEPPSSSTTPVQTTTTTAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQ 810
Query: 257 TTGATSPRTSLT 222
TT T+P T+ T
Sbjct: 811 TTTITAPETTST 822
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 431 TSTRPGTGASASRPNPTRPGPQSQSLFRSYGSNLP--TSLTYIILSTRGSSPWRPAADMG 258
TST P + +++ T P++ S SN P T+ T +T P + +
Sbjct: 797 TSTEPPSSSTSPVQTTTITAPETTSTEPPSSSNTPVQTTTTTAPETTSTEPPSSSTSPVQ 856
Query: 257 TTGATSPRTSLT 222
TT T+P T+ T
Sbjct: 857 TTTTTAPETTST 868
>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 401 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTT 252
A P P+ P P ++ +S NLP S+ + R G SP W P A M TT
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPA-MPTT 459
>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
protein T11B7.4d protein.
Length = 1424
Score = 27.9 bits (59), Expect = 5.9
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -3
Query: 401 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRPAADMGTT 252
A P P+ P P ++ +S NLP S+ + R G SP W P A M TT
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPA-MPTT 459
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.9 bits (59), Expect = 5.9
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = -3
Query: 437 ARTSTRPGTGASA-SRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADM 261
A TS+ P G A SR PT + LFR +P T + SSP R A+
Sbjct: 3903 AFTSSSPEVGLEADSRSRPTER--TLRGLFRRSSPTMPEFSTRHV----SSSPTRRRANR 3956
Query: 260 GTTGATSPRTSLT*IFKVRREYPDTAAN 177
G + S +S I + + PD N
Sbjct: 3957 GPVTSVSQGSSAEDILALMQAQPDALEN 3984
>Z70310-1|CAA94366.1| 552|Caenorhabditis elegans Hypothetical
protein R11A8.1 protein.
Length = 552
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -3
Query: 212 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 84
K+ +E D A N + FR I+PF P+ +N Q + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482
>X15242-1|CAA33320.1| 441|Caenorhabditis elegans beta-tubulin
protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 495 IFNMTSRKSSYVSDWIRTRVLRPSADLPSR 584
+ N+ ++ SSY DWI V D+P R
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPR 359
>U70844-1|AAB09092.1| 441|Caenorhabditis elegans Mechanosensory
abnormality protein7 protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.7
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 495 IFNMTSRKSSYVSDWIRTRVLRPSADLPSR 584
+ N+ ++ SSY DWI V D+P R
Sbjct: 330 MLNIQNKNSSYFVDWIPNNVKTAVCDIPPR 359
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 196 IRTPPQMRCSSRSEPYLPSIGFHGT 122
I T Q + SS +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,549,010
Number of Sequences: 27780
Number of extensions: 325296
Number of successful extensions: 1212
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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