Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0121
(601 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45730.1 68418.m05622 DC1 domain-containing protein contains ... 29 1.8
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 29 2.4
At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to ... 29 3.1
At5g42370.1 68418.m05159 expressed protein 29 3.1
At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family... 29 3.1
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic... 29 3.1
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox... 28 4.1
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 28 5.4
At1g21020.1 68414.m02630 hypothetical protein similar to At3g265... 28 5.4
At5g22390.1 68418.m02612 expressed protein 27 7.2
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical... 27 7.2
At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp... 27 9.5
At3g60520.1 68416.m06769 expressed protein 27 9.5
At2g18840.1 68415.m02194 integral membrane Yip1 family protein c... 27 9.5
At2g13950.1 68415.m01550 DC1 domain-containing protein contains ... 27 9.5
At2g05210.1 68415.m00549 expressed protein 27 9.5
At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase fa... 27 9.5
At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase fa... 27 9.5
>At5g45730.1 68418.m05622 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 519
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = -1
Query: 397 PVQTRHAPVLRANP----YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRPA 248
P +RH P+ + +P Y++ CR PL L Y + LR W+ PA
Sbjct: 68 PCHSRH-PLKKVSPETIDYTDGKCQFCRSPLVDLMYHCSICNFSVDLRCWLNPA 120
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 29.1 bits (62), Expect = 2.4
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 205 RTLKIQVRDVRGDVAPVVPISAAGLQGEEPLVDRIM*VREVGKLD 339
R L +QV+DV +AP V +S G+ + I + + KLD
Sbjct: 104 RDLALQVKDVFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLD 148
>At5g45900.1 68418.m05645 autophagy 7 (APG7) nearly identical to
autophagy 7 [Arabidopsis thaliana] GI:19912147; contains
Pfam profile PF00899: ThiF family
Length = 697
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -2
Query: 207 PQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRR 73
P ++G CG +V NH++LL +S+ L+ ++S +R +
Sbjct: 42 PISITGFYGPCGHPQVSNHLTLLSESLPLDEQSLIASTSHGNRNK 86
>At5g42370.1 68418.m05159 expressed protein
Length = 447
Score = 28.7 bits (61), Expect = 3.1
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -3
Query: 146 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 36
P Y + + Q+ +K +P PL + R L W TPS R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322
>At4g37130.1 68417.m05258 hydroxyproline-rich glycoprotein family
protein
Length = 513
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -3
Query: 428 STRPGTGASASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTTG 249
++ P +GA S N GP S SLF + S PTS + T +P ++ T G
Sbjct: 409 TSNPSSGAGFSFLNTPASGPSS-SLFATPSSTAPTSSLFGPSPTPTQTPLFGSSPASTFG 467
Query: 248 AT 243
+T
Sbjct: 468 ST 469
>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
to low affinity calcium antiporter CAX2 (GI:1488267)
[Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 441
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = +3
Query: 9 SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRVPWNPI 140
S++ SL TS + PK P+++ S K +FC L++ +P+ P+
Sbjct: 41 SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86
>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
[Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
thaliana]
Length = 926
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = -1
Query: 202 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQK 104
+S + P R ++PYLPS G RTLR+K
Sbjct: 215 QSQKDHPSKRILFTNQPYLPSETPSGLRTLREK 247
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 440 NARTSTRPGTGASASRPNPTRPGPQSQS 357
+++T + G SASR + +RPGP + S
Sbjct: 419 SSKTKSESSFGQSASRSSESRPGPSTSS 446
>At1g21020.1 68414.m02630 hypothetical protein similar to At3g26530,
At1g08760, At1g08740, At2g29240, At1g35650
Length = 751
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 386 PTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSS 285
PTRPG +S SL R G+N PT+ T + + SS
Sbjct: 499 PTRPGLRS-SLKRKRGNNGPTAATILTPAVDNSS 531
>At5g22390.1 68418.m02612 expressed protein
Length = 202
Score = 27.5 bits (58), Expect = 7.2
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 81 ERSGKSFLFCLSVRVPWNPIEG 146
+ S KSFL LS PWNP +G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38
>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
DNA Helicase [Arabidopsis thaliana] GI:11121449
Length = 1188
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = -1
Query: 244 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 155
H H +P+ S S S+RTPP R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258
>At5g06520.1 68418.m00735 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam profile: PF01805
surp module
Length = 679
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 448 TNITHEHRPDPAPAHPLPVQTRHAPVLR-ANPYSEVTD 338
T + H P+ +P PLP++ +PVL +P S D
Sbjct: 608 TQMQPPHTPETSPPLPLPLKNESSPVLADQHPDSSTID 645
>At3g60520.1 68416.m06769 expressed protein
Length = 129
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/47 (36%), Positives = 23/47 (48%)
Frame = -3
Query: 374 GPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRPAADMGTTGATSPR 234
G S+ +RS S+ + ++ SS PAAD G TG SPR
Sbjct: 69 GGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPR 115
>At2g18840.1 68415.m02194 integral membrane Yip1 family protein
contains Pfam domain, PF04893: Yip1 domain
Length = 281
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = -3
Query: 440 NARTSTRPGTGASASRPNPTRPG-PQSQSLFRS--YGSNLP 327
N + PGT +A P+PTRP P S S S SNLP
Sbjct: 25 NESVQSGPGTVLAARPPSPTRPSIPVSSSSSSSPFMQSNLP 65
>At2g13950.1 68415.m01550 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 517
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = -2
Query: 384 DTPRSSE-PILIPKLRIQFADFPYLHYSID*RLFTLETC----CGYGYDRRDISTYIPHL 220
+ PR P+ L ++ Y HY F C CG+ YD +D S +
Sbjct: 312 NAPRKKHHPLHTHPLTLKVVSIGYDHYRRRGNYFDCGACKRASCGFVYDSQDFSLDLRCA 371
Query: 219 NFQGPQRVSGHR 184
+ P + GH+
Sbjct: 372 SISEPFQYQGHK 383
>At2g05210.1 68415.m00549 expressed protein
Length = 364
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -1
Query: 202 ESIRTPPQMRCSSRSEPYLPSIGFHGTRTLRQKRKLFPDLSAASSGHFGLPR 47
+S T C+ +E Y +GF T TLR+KR L S +F PR
Sbjct: 282 DSTATLEAFLCNKDAE-YFWGLGFQDTETLRKKRNWL--LGIRESSNFVAPR 330
>At2g03890.2 68415.m00352 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 530
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 129 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 10
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
>At2g03890.1 68415.m00351 phosphatidylinositol 3- and 4-kinase
family protein low similarity to phosphatidylinositol
4-kinase type-II beta [Homo sapiens] GI:20159767;
contains Pfam profile PF00454: Phosphatidylinositol 3-
and 4-kinase
Length = 650
Score = 27.1 bits (57), Expect = 9.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = -2
Query: 129 MELERSGRKENSSRTSRRRLQATLGYPVEHSFLKTRERLL 10
MEL+RS ++ T +RRLQ L +P E S L + +L
Sbjct: 60 MELDRS----DNVHTVKRRLQIALNFPTEESSLTYGDMVL 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,968,476
Number of Sequences: 28952
Number of extensions: 312532
Number of successful extensions: 1078
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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