Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0119
         (743 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   2.0  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   6.0  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   6.0  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    22   6.0  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   7.9  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 159 RSHR*GCCCTVCPR 118
           R+H   C CT+CP+
Sbjct: 2   RTHTLPCKCTICPK 15


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -3

Query: 153 HR*GCCCTVCPRGL 112
           HR G CC  CP  L
Sbjct: 99  HRPGRCCKTCPGDL 112


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 9   APNKMKLLVVFAMCVLAASA 68
           APN  +  VV+A C L A+A
Sbjct: 123 APNGHQTQVVYASCKLQAAA 142


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 569 LQVDVLIF-KYWLYLVLWA 516
           LQV  + F  YWLYLVL A
Sbjct: 49  LQVLFVSFVSYWLYLVLEA 67


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -1

Query: 569 LQVDVLIF-KYWLYLVLWA 516
           LQV  + F  YWLYLVL A
Sbjct: 67  LQVLFVSFVSYWLYLVLEA 85


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 74 DAGAGSEHAHCEHNEKFHFVR 12
          D    +EH +  +NE +H V+
Sbjct: 30 DKNQNTEHNYTHNNEMYHSVK 50


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,952
Number of Sequences: 336
Number of extensions: 3186
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)