Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0119
(743 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.13
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.17
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 30 0.30
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.70
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 29 0.70
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 28 1.2
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 26 4.9
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 25 8.6
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 25 8.6
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 31.5 bits (68), Expect = 0.13
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 66 AGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLE 185
A +V+ S +P + DLE + ++LTGD SAV+ LE
Sbjct: 537 AEIVKDSFKIFNPEDSDLEKNITEALLTGDVLSAVKACLE 576
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.17
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 520 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 627
+++ YN+ M TS+C+C++ + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 51 VLAASAGVVELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIV 215
V+ A+AG+ + S+ N+D+ K+ L G Y +A ++ QG+GS++
Sbjct: 91 VMIANAGIA-IPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -1
Query: 185 FQALTYSTVVVTGEDAVVQFVLEVLV 108
F +T V+V EDAVV+FVL +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 29.1 bits (62), Expect = 0.70
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +3
Query: 78 ELSADSMSPSNQDLEDKLYNSILTGDYDS------AVRKSLEYESQGQGSIVQNVVNNLI 239
ELS +S++ N D+ +++ I + D A+ K +E+ES+G + + N L
Sbjct: 32 ELSGESLARFNNDINRRIFELIHSHDSHERFGGILAIGKLIEFESEGDVTNLSRYANYLR 91
Query: 240 IDKRRTPW 263
+ T W
Sbjct: 92 MTLPSTDW 99
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 28.3 bits (60), Expect = 1.2
Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +1
Query: 484 YLVGEQQSDFK--AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 612
YL+ S++ +HN +N + + S ++ + +R+ V+ GNS+
Sbjct: 603 YLLDSAASNYSGTSHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = -1
Query: 710 ELQGIVEFAVVDEEQDVVSYLAGWKNHCSLVLSALLPPYTTRSRALQLQVDVLIFKYWLY 531
++Q FA + +EQ + +L NH +VLS + + ++ +D + K +
Sbjct: 337 QIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAKIKQF 396
Query: 530 LVLWALKSLCCSP 492
L+SL P
Sbjct: 397 NSKLGLESLTVQP 409
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 662 RPVLHLQPRIQRCLGARYDRERL 730
RP +H P+I R LG YD L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 8.6
Identities = 19/63 (30%), Positives = 26/63 (41%)
Frame = +3
Query: 147 TGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRTPWSTATSCGSATDRILSKSTSH* 326
T Y S +KS S V+ + + I D S S SA D +SKS +
Sbjct: 562 TKKYGSVAKKSFFQGVSDAKSFVKKIKSTYIDDSSSNSPSDIESNYSADDNEISKSKAQN 621
Query: 327 ALD 335
A+D
Sbjct: 622 AID 624
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,746,059
Number of Sequences: 5004
Number of extensions: 52459
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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