Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0119
         (743 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0430 + 3258438-3259200,3259929-3261454                           29   5.2  
04_01_0526 - 6901003-6901056,6901070-6901404,6901423-6901607,690...    28   6.8  
11_06_0224 + 21447875-21448944,21449465-21449624                       28   9.0  
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344...    28   9.0  
01_06_1618 - 38681729-38683989,38685577-38685796                       28   9.0  
01_01_0433 + 3282195-3285185                                           28   9.0  

>01_01_0430 + 3258438-3259200,3259929-3261454
          Length = 762

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = -2

Query: 736 SPEAFTIVSSSKASLNSRL*MKNRTSFRTWRAGRTIAPWCCQRC 605
           SP+  T +   K S        + T+FR+WRAG     W   RC
Sbjct: 36  SPDQATALLQLKRSFTVNT--ASATAFRSWRAGTDCCHWAGVRC 77


>04_01_0526 -
           6901003-6901056,6901070-6901404,6901423-6901607,
           6902201-6904641
          Length = 1004

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -1

Query: 695 VEFAVVDEEQDVVSYLAGWKNHC 627
           VE  VVDEEQ +V+Y   W N C
Sbjct: 723 VELEVVDEEQTIVTY---WANDC 742


>11_06_0224 + 21447875-21448944,21449465-21449624
          Length = 409

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -2

Query: 148 VRMLLYSLSSRSWLEGLMLSADSSTTPALAASTHIANTTRSFILLGAFS 2
           +R +L +L   +  + LML     T+PA+AA+  + N T  FI + A S
Sbjct: 133 LRFVLLALGGVTGFQALMLQGMKRTSPAIAAA--MPNLTPGFIFVVAAS 179


>04_04_0200 -
           23529497-23531938,23532586-23533720,23534272-23534463,
           23535527-23535570
          Length = 1270

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 78  ELSADSMSPSNQDLEDKLYNSILTGDYDSAVRKSLEYESQGQGSIVQN-VVNNLIIDKRR 254
           ++S+DS+SP N +  D     +L   Y  A+      E     + + N V NN + + + 
Sbjct: 778 DMSSDSLSPENNETAD----DVLVEGYSVAIVDPCSNEKSAYHAHIPNDVANNEVEEWQI 833

Query: 255 TPWSTATSCGSATD 296
            P ST  S    T+
Sbjct: 834 DPSSTKESSACLTN 847


>01_06_1618 - 38681729-38683989,38685577-38685796
          Length = 826

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 246 KRRTPWSTATSCGS 287
           +RR PWS+++SCGS
Sbjct: 8   RRRRPWSSSSSCGS 21


>01_01_0433 + 3282195-3285185
          Length = 996

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 664 TSFRTWRAGRTIAPWCCQRC 605
           T+FR+WRAG     W   RC
Sbjct: 54  TAFRSWRAGTDCCRWAGVRC 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,866,519
Number of Sequences: 37544
Number of extensions: 376248
Number of successful extensions: 1177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1968901276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)