Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0117
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.53 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.53 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.53 
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   3.8  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.7  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 582 TRPSGRWCELPSAGLC 629
           ++ S + CE+PSAGLC
Sbjct: 97  SKKSCQGCEMPSAGLC 112



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 541 EQYYYRKDKPS*GKTNLSHDGLIPAH 464
           +QYYY K+ P+  +  ++H   +  +
Sbjct: 357 QQYYYNKNHPN-SENYINHQNYVQGY 381


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 582 TRPSGRWCELPSAGLC 629
           ++ S + CE+PSAGLC
Sbjct: 45  SKKSCQGCEMPSAGLC 60



 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -3

Query: 541 EQYYYRKDKPS*GKTNLSHDGLIPAH 464
           +QYYY K+ P+  +  ++H   +  +
Sbjct: 305 QQYYYNKNHPN-SENYINHQNYVQGY 329


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 582 TRPSGRWCELPSAGLC 629
           ++ S + CE+PSAGLC
Sbjct: 228 SKKSCQGCEMPSAGLC 243


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 170 ALFFDRCTAPVKLPAWQC 117
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 170 ALFFDRCTAPVKLPAWQC 117
           +L+F  CTA  ++  W C
Sbjct: 223 SLWFINCTAKGRVAVWMC 240


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/40 (27%), Positives = 15/40 (37%)
 Frame = +1

Query: 88   LKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 207
            L  PR P   H  +     A   S + +G  R     +KP
Sbjct: 916  LTSPRQPAETHAGSPCRNSASPASSDRSGTPRSTNGDRKP 955


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,155
Number of Sequences: 336
Number of extensions: 3285
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)