Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0117
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    28   1.3  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    27   1.8  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.3  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   7.1  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   9.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.3  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 479 TVVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPE 634
           T  RQ++FT  W+    + ++   G + S +W  HS       T +  + PE
Sbjct: 195 TAWRQITFT--WITLMFISMIIPIGISFSKLWKKHSRRTAQFLTQLALLEPE 244


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -3

Query: 574 PNVRNCGSSRTEQYYYRKDKPS*GK 500
           P V N GSSRT+ +Y RK   + GK
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAGK 110


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 149 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMF 250
           Y+C  +  +S G L  SED ++ W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 158 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 9
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 349 CGSQAFIATLLFDPSMSALPIIAKQIRQAL 438
           CGS   I  +LF  S S L   +++I Q L
Sbjct: 511 CGSSPAIKLILFSKSFSVLQSTSEKIEQLL 540


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 329  NFSGTSC*KLFILKDR*AVLSQSL 258
            N  G S  KLFI+KD   V+SQ L
Sbjct: 3491 NIGGRSPQKLFIVKDSGQVMSQDL 3514


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,187
Number of Sequences: 5004
Number of extensions: 55616
Number of successful extensions: 119
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)