Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0117
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0721 + 20401217-20401360,20401689-20401809,20401969-204020... 34 0.11
03_05_0183 - 21681673-21682524 33 0.26
01_06_0456 + 29521282-29522064 32 0.45
12_01_0060 - 499291-501228 30 1.8
10_08_0996 - 22112020-22112859 30 1.8
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 3.2
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 3.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.5
01_05_0188 + 19055421-19056857 28 5.5
06_03_1448 + 30235336-30236763 28 7.3
06_03_1443 + 30182018-30183445 28 7.3
06_03_1440 + 30166515-30167942 28 7.3
06_03_1437 + 30151030-30152457 28 7.3
06_03_1429 + 30100834-30102261 28 7.3
06_03_1425 + 30084383-30085810 28 7.3
06_03_1420 - 30053713-30055140 28 7.3
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 7.3
06_03_0507 + 21603472-21603750,21604371-21604463,21605046-216053... 27 9.7
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 9.7
01_07_0171 + 41683670-41683872,41684386-41684483,41684614-416846... 27 9.7
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 9.7
>08_02_0721 +
20401217-20401360,20401689-20401809,20401969-20402067,
20402790-20402851,20403680-20403797,20404004-20404343,
20404435-20404582,20405043-20405144,20405240-20405359,
20405812-20405895,20405974-20406101,20408314-20408389,
20408556-20408631,20408800-20408876,20408975-20409031,
20409411-20409555,20409634-20409806,20409928-20410054,
20410090-20410192,20410492-20410688,20410946-20411097
Length = 882
Score = 33.9 bits (74), Expect = 0.11
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = -1
Query: 591 SAECMNQMSETAVPLVLSSITIAKTSHHRVKLTCLTTV*SQLTFPFDG*TIQRLANLLRN 412
SA C+N + +VL + AK + T++ SQL+F +++R+ L++
Sbjct: 732 SASCINIIDPVEQAVVLCQVEKAKEG---MLNQLYTSISSQLSFVVSMRSVERIEELIQE 788
Query: 411 DRKSRHRR--IKKQ 376
D +HRR IKKQ
Sbjct: 789 DHSVKHRREKIKKQ 802
>03_05_0183 - 21681673-21682524
Length = 283
Score = 32.7 bits (71), Expect = 0.26
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +1
Query: 355 SQAFIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDRRETG 495
SQAF A LL D + +A+P++ Q R A + + + E E RR TG
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPAPE-TETETEEEPPRQRRRTG 274
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -2
Query: 128 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 6
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>12_01_0060 - 499291-501228
Length = 645
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = -1
Query: 552 PLVLSSITIAKTSHHRVKLTCLTTV*SQLTFPFDG*TIQRLANLLRNDRKSRHRRIK 382
PL+L +++ + H ++L CL S LTFP + RL + LR + R +K
Sbjct: 43 PLLLRALSSSALHLHALRLHCLLPNPSHLTFPIALKSASRLPHPLRAGEQLHARSLK 99
>10_08_0996 - 22112020-22112859
Length = 279
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = +1
Query: 355 SQAFIATLLFDPSMSALPIIAKQIRQALDCSPIKRERELGLDRRETG 495
+QAF A LL D + +A P++ Q R A + + + E E RR TG
Sbjct: 225 AQAFSAVLLADANRTASPVVVVQKRAAPE-TETETEEEPPRQRRRTG 270
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 28 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 207
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 208 RVEQKGK 228
RV+ G+
Sbjct: 114 RVDNGGR 120
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 294 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 401
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 61 TTLHAWNETPCARRYY 14
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 69 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 158
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 148 PPQSNSPPGSVLEPDHAGVLNGDE 77
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_05_0188 + 19055421-19056857
Length = 478
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 280 RPCFRSPYATEHLDQASFCPFAPREVSVLAELAL 179
RPC+R+P+AT L+ A P+ E SV + L
Sbjct: 80 RPCYRAPFAT-CLEHAHLMPYLVDEESVAFAIRL 112
>06_03_1448 + 30235336-30236763
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1443 + 30182018-30183445
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1440 + 30166515-30167942
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1437 + 30151030-30152457
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1429 + 30100834-30102261
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1425 + 30084383-30085810
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1420 - 30053713-30055140
Length = 475
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 25 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 147
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>06_03_0507 +
21603472-21603750,21604371-21604463,21605046-21605372,
21605588-21605863,21606095-21607114
Length = 664
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -2
Query: 143 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPP 21
P++LPA + P T + +R +AF +S R ++T RPP
Sbjct: 398 PLQLPAGEPPVTPAWNDTQRSKAFT---YSIRARKDTNRPP 435
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +1
Query: 112 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 237
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_07_0171 +
41683670-41683872,41684386-41684483,41684614-41684692,
41684845-41685000,41685021-41685146,41686249-41686540,
41686978-41687053,41687295-41687392,41687523-41687665,
41688522-41688579,41689055-41689213,41689291-41689343,
41689978-41690212,41690317-41690403,41690607-41690711
Length = 655
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = -1
Query: 636 RSGIIPRMVVRTTGRSA--ECMNQ--MSETAVPLVLSSITIAKTSHHRVKLTCLTT 481
+SG + ++ G+S EC+++ + + A PLV++S + H++ C+T+
Sbjct: 215 KSGNPAKYMITEEGKSTALECLSRSGLDDHAAPLVINSAPDTSNASHKLNNICMTS 270
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -3
Query: 184 ALGHLRYSLTDVPPQSNSPPGSVLEP 107
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,049,271
Number of Sequences: 37544
Number of extensions: 417416
Number of successful extensions: 1191
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1191
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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