Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0117
(645 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for MG... 74 5e-13
BC049203-1|AAH49203.1| 657|Homo sapiens solute carrier family 4... 31 3.5
AL590368-3|CAH73436.1| 654|Homo sapiens solute carrier family 4... 31 3.5
AL590368-2|CAH73435.1| 652|Homo sapiens solute carrier family 4... 31 3.5
AL590368-1|CAH73434.1| 657|Homo sapiens solute carrier family 4... 31 3.5
AL450265-3|CAI14397.1| 654|Homo sapiens solute carrier family 4... 31 3.5
AL450265-2|CAI14396.1| 652|Homo sapiens solute carrier family 4... 31 3.5
AL450265-1|CAI14395.1| 657|Homo sapiens solute carrier family 4... 31 3.5
AL161627-3|CAI13071.1| 654|Homo sapiens solute carrier family 4... 31 3.5
AL161627-2|CAI13070.1| 652|Homo sapiens solute carrier family 4... 31 3.5
AL161627-1|CAI13069.1| 657|Homo sapiens solute carrier family 4... 31 3.5
AJ420812-1|CAD12764.1| 657|Homo sapiens choline transporter-lik... 31 3.5
AJ272365-1|CAC82175.1| 652|Homo sapiens CD92 protein protein. 31 3.5
AJ245620-1|CAB75541.2| 654|Homo sapiens choline transporter-lik... 31 3.5
>BC114377-1|AAI14378.1| 44|Homo sapiens Unknown (protein for
MGC:134704) protein.
Length = 44
Score = 73.7 bits (173), Expect = 5e-13
Identities = 33/37 (89%), Positives = 34/37 (91%)
Frame = -2
Query: 413 MIGRADIEGSKSNVAMNAWLPQASYPCGNFSGTSC*K 303
MIGRADIEGSKS+VAMNAW PQASYPCGNFS TSC K
Sbjct: 1 MIGRADIEGSKSDVAMNAWPPQASYPCGNFSDTSCLK 37
>BC049203-1|AAH49203.1| 657|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 657
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL590368-3|CAH73436.1| 654|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 654
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL590368-2|CAH73435.1| 652|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 652
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL590368-1|CAH73434.1| 657|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 657
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL450265-3|CAI14397.1| 654|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 654
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL450265-2|CAI14396.1| 652|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 652
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL450265-1|CAI14395.1| 657|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 657
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL161627-3|CAI13071.1| 654|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 654
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL161627-2|CAI13070.1| 652|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 652
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AL161627-1|CAI13069.1| 657|Homo sapiens solute carrier family 44,
member 1 protein.
Length = 657
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AJ420812-1|CAD12764.1| 657|Homo sapiens choline transporter-like
protein 1, splice variant a protein.
Length = 657
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AJ272365-1|CAC82175.1| 652|Homo sapiens CD92 protein protein.
Length = 652
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
>AJ245620-1|CAB75541.2| 654|Homo sapiens choline transporter-like
protein protein.
Length = 654
Score = 31.1 bits (67), Expect = 3.5
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +2
Query: 482 VVRQVSFTL*WLVFAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL 640
++R +S L W++ +VIL S GT V +W++++ +R R+ + PE+L
Sbjct: 232 IIRYISRVLVWILTILVILGSLGGTGV--LWWLYAKQR---RSPKETVTPEQL 279
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,721,653
Number of Sequences: 237096
Number of extensions: 2276731
Number of successful extensions: 5129
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 4871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5126
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7141427170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -