Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0116
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    28   1.2  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    27   2.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.9  
SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein L13/L16|Schiz...    25   8.5  
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    25   8.5  
SPBC839.13c |rpl1601||60S ribosomal protein L13/L16|Schizosaccha...    25   8.5  
SPAC23H3.02c |ini1||RING finger-like protein Ini1|Schizosaccharo...    25   8.5  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +1

Query: 478 TVVRQVSFTLRWLVVAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPE 633
           T  RQ++FT  W+ +  + ++   G + S +W  HS       T +  + PE
Sbjct: 195 TAWRQITFT--WITLMFISMIIPIGISFSKLWKKHSRRTAQFLTQLALLEPE 244


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 149 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMF 250
           Y+C  +  +S G L  SED ++ W    K GLI+ F
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQF 162


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 19/75 (25%), Positives = 28/75 (37%)
 Frame = -2

Query: 699 SRGSTVSISLPDSARLASALEAFRHNPADGSSHHRPLGRVHEPNVRNCGSSRTEQYYYRN 520
           S  STVS S   S+   ++  +    PA  SSH   L      +     S+     +Y N
Sbjct: 367 SFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSSAFYHN 426

Query: 519 DKPS*GKTNLSHDGL 475
              S   ++ S   L
Sbjct: 427 STSSRSSSHSSSHSL 441


>SPAC23A1.11 |rpl1602|rpl16-2|60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 654 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 562
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 158 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILST 9
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTT 198


>SPBC839.13c |rpl1601||60S ribosomal protein
           L13/L16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 197

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 654 LASALEAFRHNPADGSSHHRPLGRVHEPNVR 562
           LA   +A R+NP+ G+ H R   R+ +  VR
Sbjct: 56  LAYLRKACRYNPSRGAFHFRAPSRIFQKAVR 86


>SPAC23H3.02c |ini1||RING finger-like protein
           Ini1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 573 PNVRNCGSSRTEQYYYRNDKPS*GK 499
           P V N GSSRT+ +Y R    + GK
Sbjct: 86  PRVINLGSSRTDWFYERKKFKNAGK 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,111,626
Number of Sequences: 5004
Number of extensions: 65367
Number of successful extensions: 160
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)