Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0116
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 32 0.55
12_02_1118 + 26210322-26212559 31 0.72
05_03_0263 + 11234850-11235044,11235413-11237341 30 2.2
03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399 29 3.9
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157... 29 3.9
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 5.1
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 5.1
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 6.7
01_05_0188 + 19055421-19056857 28 6.7
06_03_1448 + 30235336-30236763 28 8.9
06_03_1443 + 30182018-30183445 28 8.9
06_03_1440 + 30166515-30167942 28 8.9
06_03_1437 + 30151030-30152457 28 8.9
06_03_1429 + 30100834-30102261 28 8.9
06_03_1425 + 30084383-30085810 28 8.9
06_03_1420 - 30053713-30055140 28 8.9
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 28 8.9
03_05_0520 + 25139314-25139364,25139580-25139711,25141594-251417... 28 8.9
>01_06_0456 + 29521282-29522064
Length = 260
Score = 31.9 bits (69), Expect = 0.55
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Frame = -3
Query: 128 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTA 6
AW+C P +G+RG +RRR P S R R +T+RP + S A
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAA 58
>12_02_1118 + 26210322-26212559
Length = 745
Score = 31.5 bits (68), Expect = 0.72
Identities = 15/66 (22%), Positives = 35/66 (53%)
Frame = +1
Query: 391 SMSALPIIANKFAKRWIVHPSKGNVSWD*TVVRQVSFTLRWLVVAIVILLSTRGTAVSDI 570
S++A P++A A+ ++ G ++ V V+ W+++A+ + LS G+ + +
Sbjct: 111 SITAFPVLARILAELKLLTTDLGRMAMSAAAVNDVA---AWILLALAVALSGSGSPIISL 167
Query: 571 WFMHSA 588
W + +A
Sbjct: 168 WVLLTA 173
>05_03_0263 + 11234850-11235044,11235413-11237341
Length = 707
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +1
Query: 391 SMSALPIIANKFAKRWIVHPSKGNVSWD*TVVRQVSFTLRWLVVAIVILLSTRGTAVSDI 570
S++A P++A A+ ++ G ++ V V+ W+++A+ I LS G+ +
Sbjct: 86 SITAFPVLARILAELKLLTTDLGRMAMSAAAVNDVA---AWILLALAIALSGSGSPFVSL 142
Query: 571 WFMHS 585
W + S
Sbjct: 143 WVLLS 147
>03_05_1067 - 30105850-30106034,30106036-30106192,30106301-30106399
Length = 146
Score = 29.1 bits (62), Expect = 3.9
Identities = 21/67 (31%), Positives = 30/67 (44%)
Frame = +1
Query: 28 RTVFRSKRAEW*RGGNARRRLKLPRDPVRGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKP 207
R + +R E G +RR L D +RG+ + A H AG + RG KP
Sbjct: 59 RCIAEGRREEEEEVGRSRRGKDLDLDDMRGYGET-----ATHHGLRLAGREEVSPRGGKP 113
Query: 208 RVEQKGK 228
RV+ G+
Sbjct: 114 RVDNGGR 120
>01_07_0197 +
41912207-41912652,41913226-41913800,41913828-41915748,
41915836-41916049,41916143-41916394,41916469-41916528,
41916646-41916776,41916898-41917012,41917084-41917239
Length = 1289
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +3
Query: 294 YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 401
YK F A G RKV GIT + PS+ D+AF S +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 5.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -1
Query: 61 TTLHAWNETPCARRYY 14
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 5.1
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 69 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 158
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 148 PPQSNSPPGSVLEPDHAGVLNGDE 77
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>01_05_0188 + 19055421-19056857
Length = 478
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1
Query: 280 RPCFRSPYATEHLDQASFCPFAPREVSVLAELAL 179
RPC+R+P+AT L+ A P+ E SV + L
Sbjct: 80 RPCYRAPFAT-CLEHAHLMPYLVDEESVAFAIRL 112
>06_03_1448 + 30235336-30236763
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1443 + 30182018-30183445
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1440 + 30166515-30167942
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1437 + 30151030-30152457
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1429 + 30100834-30102261
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1425 + 30084383-30085810
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_03_1420 - 30053713-30055140
Length = 475
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 133 SPPGSVLEPDHAGVLN-GDERFRHVTTLHAWNETPCARRYYR 11
+PP L +L+ GD+R+ V LH W+E R YR
Sbjct: 126 NPPPPTLGDHQLAILSCGDDRYV-VAALHVWSEFTSTLRLYR 166
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +1
Query: 25 GRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 147
G+T+ R R A W RG A RR +LP G +AG G+
Sbjct: 36 GQTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>03_05_0520 +
25139314-25139364,25139580-25139711,25141594-25141731,
25143191-25143241,25143662-25143751,25143854-25144000,
25144108-25144218,25144307-25144375,25144777-25145517,
25145840-25146004,25146376-25146442,25146580-25146704,
25148714-25148983,25149065-25149199,25149316-25149497,
25149669-25149744
Length = 849
Score = 27.9 bits (59), Expect = 8.9
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 517 VVAIVILLSTRGTAVSDIWFMHSAERPVVRTTIRGIMPERL*GRSQPSRI 666
VV I ST +VS + S RP+V TT ++P + RS P I
Sbjct: 308 VVPTTISTSTAAVSVS-AETISSPVRPIVPTTTAAVLPASVTARSAPENI 356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,115,699
Number of Sequences: 37544
Number of extensions: 505235
Number of successful extensions: 1505
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1505
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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