Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0116
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical...    29   4.5  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL110485-26|CAB60359.3|  779|Caenorhabditis elegans Hypothetical
           protein Y46G5A.17 protein.
          Length = 779

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 23/90 (25%), Positives = 37/90 (41%)
 Frame = +1

Query: 343 LACGSQAFIATLLFDPSMSALPIIANKFAKRWIVHPSKGNVSWD*TVVRQVSFTLRWLVV 522
           L  G+ A  + +  D S    P I N     +IVH   G+     ++   V+  L WL+ 
Sbjct: 64  LVVGAVAVFSVIKHDLSFGIFPFIQN-----YIVHYIFGDGYLGQSISIAVAGALLWLIF 118

Query: 523 AIVILLSTRGTAVSDIWFMHSAERPVVRTT 612
             ++ LS +       W   S  +PV + T
Sbjct: 119 VQLLRLSIKTLLEYKGWMYESPGKPVSKAT 148


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -2

Query: 708  PPDSRGSTVSISLPDSARLASALEAFRHNPAD-GSSHHRPLGRVHEPNVRNCGSSR 544
            PP S  S V+ + P   +    +E+  H PAD GS    PLG    P  R  G+ +
Sbjct: 868  PPGSASSMVAHTAPGPLKSHRNVES-GHAPADFGSGSVEPLGSPPGPQTRPIGTGQ 922


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,561,998
Number of Sequences: 27780
Number of extensions: 384504
Number of successful extensions: 1029
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)