Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0116
         (739 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   4.3  
At3g62370.1 68416.m07006 expressed protein                             28   7.4  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    28   7.4  
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo...    27   9.8  
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi...    27   9.8  

>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 151 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 35
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 136 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 41
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 593 GRWCELPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 724
           G W +L         +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
           haloacid dehalogenase-like hydrolase familiy protein
           similar to SP|O14072 Cation-transporting ATPase 4 (EC
           3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
           accession IPR001757: ATPase, E1-E2 type; contains Pfam
           profile PF00702: haloacid dehalogenase-like hydrolase
          Length = 1179

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -1

Query: 286 IDRPCFRSPYATEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 152
           +D  CF        +DQA  C   P + S   E+   H R  +TD
Sbjct: 73  VDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117


>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 834

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 387 SFDVGSSYHCEQIRQALDCSP 449
           S  +G  +HC+ +++ L+C+P
Sbjct: 570 SVQLGQEFHCQLLKRGLECNP 590


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,864,330
Number of Sequences: 28952
Number of extensions: 369443
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)