Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0114
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    29   0.60 
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    27   1.8  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    27   2.4  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    26   5.6  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    26   5.6  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.4  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    25   7.4  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 349 SGCGRCRVWSMFVRYVRFSE 408
           +GCG+  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = -3

Query: 337 PDTPRSSEPILIPKLRIQFADFPYLHYSSTRGSSPWRPAADMGTNRRDISTYIPHLNF 164
           P   RSS  I  P  +  F D P+  +S  + SS  RP   +  +  D    IPH NF
Sbjct: 550 PILKRSS--IGTPSQQAYFPDAPHNCHSVPQNSSYPRPPMQVNRSPIDSMQTIPHANF 605


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 220 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 92
           A  GT++ +IST +P      P++VSGH     A R+P+  S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 368 RHRPHPLPVQTRHAPV-LRANPYSEVTDPICRLPLPTLFID*RLFTLETCCGYGYEPAR 195
           RH     P++T   P+ +   P  E+   I R   P L    +L  +  CC YG  P +
Sbjct: 478 RHIKDQRPLKTGEGPIAIIMTPTRELAVQIFRECKPFL----KLLNIRACCAYGGAPIK 532


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 434 QKLYIFNMTLAKIVLRFGLDPDPRSRPSADLPSR 535
           QK Y+ N     ++LR  +  DP S P  ++P+R
Sbjct: 74  QKKYVINEIAKVLLLRPTVKTDPLSLPIQNVPAR 107


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 386 TNIDQTRHRPHPLPVQTRHAPV 321
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -3

Query: 295 LRIQFADFPYLHYSSTRGSSPWRPAADMGTNRRDISTYIP 176
           L ++     Y+  S +RGS P RP++ + TN   I+   P
Sbjct: 722 LPLELLSISYIEDSPSRGSLPRRPSSALLTNPISITKSNP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,769,901
Number of Sequences: 5004
Number of extensions: 57845
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)