Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0114
(666 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.82
06_01_0350 + 2534422-2535615 31 1.1
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 30 1.9
05_06_0098 + 25560158-25560925 30 1.9
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.5
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 4.4
04_02_0007 + 8464923-8465155,8466037-8466591,8466645-8467662,846... 28 5.8
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 5.8
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 7.7
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 28 7.7
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 7.7
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.82
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -2
Query: 386 TNIDQTRH------RPHPLPVQTRHAPVLRANP 306
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -1
Query: 81 PWNSNAQAEKKTLPGPLGGVFRP 13
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/38 (44%), Positives = 20/38 (52%)
Frame = +2
Query: 485 GLDPDPRSRPSADLPSRKSCRFRFVRDRHDSVRPPFNG 598
G PDP SRPS PSR + R+ S RPP +G
Sbjct: 34 GSGPDPSSRPSNPTPSRPAAP---RREAAASARPPSSG 68
>05_06_0098 + 25560158-25560925
Length = 255
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 365 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFI 252
HRP P P + P L +P + V I P PT F+
Sbjct: 31 HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFV 68
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 356 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 267
H L + RH P L+A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 362 RPHPLPVQTRHAPVLRANPYSEVTDP 285
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>04_02_0007 +
8464923-8465155,8466037-8466591,8466645-8467662,
8467768-8468485,8468651-8468937
Length = 936
Score = 28.3 bits (60), Expect = 5.8
Identities = 18/52 (34%), Positives = 31/52 (59%)
Frame = +1
Query: 145 ILSADLENSGEGCTWRCRAGSYPYPQQVSKVKSL*SMNNVGKGSRQIGSVTS 300
+LS+ +++S C+WR S YP +V ++ L S + G+ S IG++TS
Sbjct: 111 VLSSWMDDSLNFCSWRGVTCSSSYPSRVVHLE-LSSSHLTGRISGCIGNLTS 161
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Frame = -2
Query: 269 LPTLFID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLP 93
+P+L D + L G+ P+ H P P+ S R PP R S RSE P
Sbjct: 12 MPSLLADVEVSHL---AGFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFP 68
Query: 92 SI 87
+
Sbjct: 69 PL 70
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -3
Query: 388 ARTSTRPGTGRIRFPSKPDTPRSSE 314
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 27.9 bits (59), Expect = 7.7
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 142 RILSADLENS-GEGCTWRCRAGSYPYPQQVSKVKSL*SMNNVGKGSRQIGSVTSE 303
RI+ + NS G R S P P VS+ +S S+ NV K + + +VTSE
Sbjct: 211 RIMPLPVPNSSGTAQIQRIPKKSEPSPSVVSRSRSTSSVTNVPKPTTRPATVTSE 265
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -3
Query: 376 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 290
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,491,815
Number of Sequences: 37544
Number of extensions: 436108
Number of successful extensions: 1487
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1487
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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