Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0114
         (666 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical...    30   1.7  
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linke...    29   2.2  
U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linke...    29   2.2  
AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-lin...    29   2.2  
AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-lin...    29   2.2  
AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical...    29   3.0  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    28   6.8  
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   9.1  
U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical pr...    27   9.1  

>AL032657-11|CAA21737.3|  372|Caenorhabditis elegans Hypothetical
           protein Y47H9C.11 protein.
          Length = 372

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = +2

Query: 419 NIMRPQKLYIFNMTLAKIVLRFGLDPDPRSRPSADLPSRKSCRFRFVRDRHDSVRPPFNG 598
           N M   +    N  L +  LRFG DPD R+R   +L  +    F F+R + +SVR    G
Sbjct: 183 NAMDQLETITTNNKLEEFELRFGNDPDERNR--WELNGKFRMMFLFLRVQLNSVRKFSIG 240

Query: 599 QLR 607
            L+
Sbjct: 241 MLK 243


>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
            C25H3.8 protein.
          Length = 2148

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = -2

Query: 395  T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 282
            T +++ID T H PHP+ VQ   T+   V+   P   V+ P+
Sbjct: 904  TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944


>U23529-9|AAL32210.1|  713|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform b protein.
          Length = 713

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 541 RLTARKIRGRPRTRVRIQSET*DDFRECHIKYIQF--LRPHYIKI--LTR*NEHNARTST 374
           R+    IR R  TR    S +  D     ++  +   +R + +KI  LT  NE+   TS+
Sbjct: 510 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 569

Query: 373 RPGTGRIRFPSKPDT 329
           +PG  R+  P+K DT
Sbjct: 570 QPGRDRLAPPNKTDT 584


>U23529-8|AAL32209.1|  682|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 1, isoform a protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 541 RLTARKIRGRPRTRVRIQSET*DDFRECHIKYIQF--LRPHYIKI--LTR*NEHNARTST 374
           R+    IR R  TR    S +  D     ++  +   +R + +KI  LT  NE+   TS+
Sbjct: 479 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 538

Query: 373 RPGTGRIRFPSKPDT 329
           +PG  R+  P+K DT
Sbjct: 539 QPGRDRLAPPNKTDT 553


>AF117300-1|AAF26201.1|  713|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1a protein.
          Length = 713

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 541 RLTARKIRGRPRTRVRIQSET*DDFRECHIKYIQF--LRPHYIKI--LTR*NEHNARTST 374
           R+    IR R  TR    S +  D     ++  +   +R + +KI  LT  NE+   TS+
Sbjct: 510 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 569

Query: 373 RPGTGRIRFPSKPDT 329
           +PG  R+  P+K DT
Sbjct: 570 QPGRDRLAPPNKTDT 584


>AF075245-1|AAD13747.1|  682|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-1b protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
 Frame = -3

Query: 541 RLTARKIRGRPRTRVRIQSET*DDFRECHIKYIQF--LRPHYIKI--LTR*NEHNARTST 374
           R+    IR R  TR    S +  D     ++  +   +R + +KI  LT  NE+   TS+
Sbjct: 479 RIARALIRRRSTTRPERGSSSNSDDSSSEVEGEEKPEVRNNGLKIPQLTVNNENRGETSS 538

Query: 373 RPGTGRIRFPSKPDT 329
           +PG  R+  P+K DT
Sbjct: 539 QPGRDRLAPPNKTDT 553


>AC084159-10|AAK39362.1|  310|Caenorhabditis elegans Hypothetical
           protein Y73B3A.5 protein.
          Length = 310

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = +2

Query: 437 KLYIFNMTLAKIVLRFGLDPDPRSRPSADLPSRKSCRFRFVRDRHD 574
           KL IF +   K V RF +  D  + P+AD  S  + +  +V+D  D
Sbjct: 35  KLNIFQVIGKKFVYRF-VTTDAHTPPTADFSSNMNMKMCYVKDEKD 79


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 488 LDPDPRSRPSADLPSRKSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 628
           LD    ++P       ++ R +F +  H  + PP  G++R   D GN
Sbjct: 395 LDTMDINKPPPPQAIYQAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 446 IFNMTLAKIVLRFGLDPDPRSRPSADLPSR 535
           I  + + +I     LDP+PR RP+   PSR
Sbjct: 143 ISQLEIEEIDSSMSLDPEPRRRPATRTPSR 172


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = -1

Query: 162 KVRREYPDTAANAVLFA---FRT--ISPFYRIPWNSNAQAEKKTLPGP 34
           K+ +E  D A N +      FR   I+PF   P+ +N Q   + +PGP
Sbjct: 435 KIEKEIADVAENQIRRIEENFRNPFIAPFAFFPYQNNFQMAPQNVPGP 482


>U41019-1|AAM51510.1|  542|Caenorhabditis elegans Hypothetical
           protein C04E7.4 protein.
          Length = 542

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 146 IRTPPQMRCSSRSEPYLPSIGFHGT 72
           I T  Q + SS  +P+LP++GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,674,021
Number of Sequences: 27780
Number of extensions: 338848
Number of successful extensions: 1128
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1497472076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)