Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0114
(666 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.5
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 3.5
DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related pro... 23 3.5
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 22 4.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 22 4.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 22 4.6
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 22 4.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 22 4.6
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 22 4.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 22 4.6
DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein. 22 6.0
DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex det... 21 8.0
DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex det... 21 8.0
DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex det... 21 8.0
AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex det... 21 8.0
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 21 8.0
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 348 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 446
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 22.6 bits (46), Expect = 3.5
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 348 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 446
K +RPV DV +C ++S LI LKN I
Sbjct: 42 KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74
>DQ015969-1|AAY81926.1| 397|Apis mellifera stargazin related
protein STG-1 protein.
Length = 397
Score = 22.6 bits (46), Expect = 3.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 477 YVSDWIRTRVLGLPRIFLAVS 539
YVS +I T V G IFL +S
Sbjct: 234 YVSGFITTEVAGTYAIFLYIS 254
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 22.2 bits (45), Expect = 4.6
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 582 RTESCRSRTKRNRHD 538
RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240
>DQ288391-1|ABC41341.1| 630|Apis mellifera vasa protein protein.
Length = 630
Score = 21.8 bits (44), Expect = 6.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -2
Query: 110 SEPYLPSIGFHGTRTLRQKRKLFPDLSA 27
SE P+ HG R RQ+ + D +
Sbjct: 472 SENNYPTTSIHGDRLQRQREEALADFKS 499
>DQ325109-1|ABD14123.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 8.0
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 578 QNRADRARNETDTTYG*EDP-RKAENAGPDPVRN--VRRFSRVSY*IYTVFEAALY*NTN 408
+ R R+R +Y E+ RK + R+ R S+ I ++ ++ N N
Sbjct: 36 RKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95
Query: 407 SLKRT*RTNIDQTRHRPHPLPV 342
+ K+ NI+ P P+PV
Sbjct: 96 NYKKLQYYNINYIEQIPVPVPV 117
>DQ325108-1|ABD14122.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 8.0
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 578 QNRADRARNETDTTYG*EDP-RKAENAGPDPVRN--VRRFSRVSY*IYTVFEAALY*NTN 408
+ R R+R +Y E+ RK + R+ R S+ I ++ ++ N N
Sbjct: 36 RKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95
Query: 407 SLKRT*RTNIDQTRHRPHPLPV 342
+ K+ NI+ P P+PV
Sbjct: 96 NYKKLQYYNINYIEQIPVPVPV 117
>DQ325106-1|ABD14120.1| 177|Apis mellifera complementary sex
determiner protein.
Length = 177
Score = 21.4 bits (43), Expect = 8.0
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 578 QNRADRARNETDTTYG*EDP-RKAENAGPDPVRN--VRRFSRVSY*IYTVFEAALY*NTN 408
+ R R+R +Y E+ RK + R+ R S+ I ++ ++ N N
Sbjct: 36 RKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 95
Query: 407 SLKRT*RTNIDQTRHRPHPLPV 342
+ K+ NI+ P P+PV
Sbjct: 96 NYKKLQYYNINYIEQIPVPVPV 117
>AY350615-1|AAQ57657.1| 410|Apis mellifera complementary sex
determiner protein.
Length = 410
Score = 21.4 bits (43), Expect = 8.0
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -2
Query: 578 QNRADRARNETDTTYG*EDP-RKAENAGPDPVRN--VRRFSRVSY*IYTVFEAALY*NTN 408
+ R R+R +Y E+ RK + R+ R S+ I ++ ++ N N
Sbjct: 269 RKRYSRSREREKKSYKNENSYRKYRETSKERSRDRKERERSKEPKIISSLSNKTIHNNNN 328
Query: 407 SLKRT*RTNIDQTRHRPHPLPV 342
+ K+ NI+ P P+PV
Sbjct: 329 NYKKLQYYNINYIEQIPVPVPV 350
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 21.4 bits (43), Expect = 8.0
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = -3
Query: 595 VERRSYRIVPIAHETKPTRLTARKIRGRPRTRVR 494
VE + Y+ V I+ T+P+ T + PR R
Sbjct: 183 VEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKR 216
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,559
Number of Sequences: 438
Number of extensions: 4382
Number of successful extensions: 24
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -