Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0112
(672 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 29 0.61
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 28 1.1
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo... 27 3.3
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 4.3
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 4.3
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.5
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 25 7.5
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb... 25 9.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 25 9.9
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 25 9.9
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 29.1 bits (62), Expect = 0.61
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Frame = +3
Query: 369 NVRSSWVFKPLWESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSEEPAAKDSSGIWCP 548
N+ S+W F L ++K ++NAD L +NG L E +KD + P
Sbjct: 189 NIYSNWSF--LSFNSKEAAGVFNADKALALGVPFGPSNG--KLCAGEAVLSKDGTTWIYP 244
Query: 549 TKM---PLRRRYFFIFTIASLTILSRLT 623
++ P +R+YF++ +SL+ L++++
Sbjct: 245 HQVVGPPRKRQYFYVLGCSSLSALNQMS 272
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 28.3 bits (60), Expect = 1.1
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 190 DFSYRLWTTG-SREIITDNFPIHSDYF 267
D+ Y LWT SR I DN+P YF
Sbjct: 112 DYEYILWTDEMSRNFIADNYPWFLPYF 138
>SPAC3C7.07c |||arginine-tRNA protein transferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 402 WESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSEEPAAKDSS 533
W + + +WN + Y+ FG+++ + IQ + + +++DSS
Sbjct: 245 WIPIENFTSLWNTGAPKYISFGDENNSDIQTAV--DYDSSEDSS 286
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 71 LYLAIMTTPHLLLNGYIQTTSANFKKLFR 157
LYL+ T HL +G I+ N+K LFR
Sbjct: 54 LYLSEFGTKHLRRHGRIEKKRRNWKGLFR 82
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 34 ISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISK 159
++ E N++ D++ D D AAS+ L + +E +T+SK
Sbjct: 256 VTKELNEEQLDALRKKDKDTAASVLAELFGSENTEEIDTVSK 297
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 426 KIWNADSNSYLEFGEKDANGI-QPLIGSEEPAAKDSSGIWCPTKMPLRRR 572
K+WN N YLE+ I + ++ + P+ + P+ P RR+
Sbjct: 15 KLWNDTKNDYLEWERSQQGQISESVVKNHSPSKRKRRPSKEPSLSPKRRK 64
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 25.4 bits (53), Expect = 7.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 501 GSEEPAAKDSSGIWCPTKMPLRRRYFFIFTIASLTILSRLTSKRTAMMSNSFS 659
G EP K ++ + + MP+ R I+T +L R K +MM++S S
Sbjct: 308 GKPEPIMKRTTLVANTSNMPVAAREASIYTGITLAEYYRDQGKNVSMMADSTS 360
>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 376
Score = 25.0 bits (52), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 616 LDRIVKLAIVNIKKYLRRSGIFVGHQIPL 530
L+ +K A+V + + R SG+ H+IPL
Sbjct: 164 LENTIKGAVVPLDEVARISGLAKAHKIPL 192
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 25.0 bits (52), Expect = 9.9
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +1
Query: 79 GDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSY 201
G YD+ A+ + SELQ +K++ D I+ L+ Y
Sbjct: 132 GRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIKALIKPQY 172
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +3
Query: 375 RSSWVFKPLWESNKLYFKI 431
R SW PLW KLY K+
Sbjct: 308 RKSWETYPLWVQVKLYEKV 326
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,696
Number of Sequences: 5004
Number of extensions: 57297
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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