Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0112
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467     30   1.9  
10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    30   1.9  
03_05_0799 + 27809301-27811550                                         29   3.4  
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200...    29   4.5  
05_01_0260 - 1993075-1994312,1996249-1997191                           28   5.9  
03_01_0150 + 1191410-1191697,1191818-1191941,1192063-1192121,119...    28   5.9  

>11_06_0613 - 25509044-25509118,25509256-25511275,25511632-25512467
          Length = 976

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/67 (28%), Positives = 35/67 (52%)
 Frame = -2

Query: 422 VELVALPQWLEYPTAPHVSIIRDIYYCLILPRCQLY*ITIFRVRYFDSSVVVK*SECIGK 243
           V L +LP++L+ P   HV  I+ +Y+  +LP    + I +  + + D S+     E + K
Sbjct: 758 VHLDSLPEFLDLPQHIHVLGIKPMYFFTVLPVWFNFPIDLPYLSFLDLSICDMRQEHVEK 817

Query: 242 LSVMISL 222
           L  + +L
Sbjct: 818 LGRLPAL 824


>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 49  NKQLYDSVISGDYDHAASIAKRLHTNNVS 135
           +++ +D++++GD+D A    K LHTN  S
Sbjct: 34  SREFHDALVAGDFDRARVHPKFLHTNATS 62


>03_05_0799 + 27809301-27811550
          Length = 749

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +3

Query: 468 EKDANGIQPLIGSEEPAAKDSSGIWCPTKMPLRRR--YFFIFTIASLTILSRLTS 626
           + DA G++  +    PAA D +G+W   +  L  R       T  SL +L  L S
Sbjct: 61  DDDAEGLRRALERAPPAAADEAGLWYGRRKVLEHRTPLMVAATYGSLAVLRLLLS 115


>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
            22220149-22220365,22220798-22221021,22221559-22221738,
            22221875-22222013,22222107-22222255,22223394-22223505,
            22223998-22224506,22224661-22224784,22224904-22225178,
            22225507-22225626,22225707-22225769,22225861-22226052,
            22226381-22226440,22226535-22226738,22226926-22227051,
            22227093-22227254,22227357-22227476,22227665-22227820,
            22227895-22227957,22228041-22228168,22228524-22228920,
            22229442-22229544,22229646-22229776,22230096-22230167,
            22230472-22230553,22231083-22231190,22231288-22231429,
            22231659-22231698,22231746-22231876,22232215-22232301,
            22232395-22232605,22232687-22232741,22232836-22232927,
            22233011-22233071,22233361-22233719
          Length = 2010

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +3

Query: 315  IKLTPGQNKAIINISDNTNVRSSWVFKPLWESNKL 419
            + LTP  N +II I  NT+V   W  K L  ++++
Sbjct: 1823 LNLTPSCNHSIITIGGNTDVELFWNAKDLLSASRV 1857


>05_01_0260 - 1993075-1994312,1996249-1997191
          Length = 726

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 398 TVGEQQALLQNLECGLQFLP*IRRKGCQWYSTT 496
           T GE++  ++ +E  LQF+  IR++ CQ +  T
Sbjct: 645 TKGEERPTMKEVEMRLQFVRTIRQRKCQQFPVT 677


>03_01_0150 +
           1191410-1191697,1191818-1191941,1192063-1192121,
           1192565-1192629,1192838-1192931,1193005-1193085,
           1193176-1193287,1193949-1194036,1194440-1194561,
           1194636-1194973,1195579-1195870,1195946-1196016,
           1197741-1197849,1198760-1198803,1198804-1198847,
           1200431-1200524
          Length = 674

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 432 WNADSNSYLEFGEKDANGIQPLIGSEEPAAKDS--SGIWCPTKMPLRRRYFFIFT 590
           WN + NS        +NG  PL  S E  A ++  +  +C T++ L  +Y  + T
Sbjct: 397 WNQNRNSVSRGVAIKSNGCTPLSTSHESTAAENLLNPPYCYTRLQLLNQYIVVLT 451


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,380,321
Number of Sequences: 37544
Number of extensions: 322510
Number of successful extensions: 831
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)