Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0112
         (672 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.28 
SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)                  31   0.84 
SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)                   31   1.1  
SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)                   28   7.9  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   7.9  

>SB_41022| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 580

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 18/64 (28%), Positives = 34/64 (53%)
 Frame = +1

Query: 31  TISAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           T+  EYN +L D   S ++     I+ +L  + +SEL++ +   I + ++  V   YR++
Sbjct: 400 TVDQEYNPKLQDKT-SKEFKELQHISSKLLDDALSELEDYLRNEIIEFLKGSVVIRYRIY 458

Query: 211 TTGS 222
           T  S
Sbjct: 459 TRKS 462


>SB_25395| Best HMM Match : CK_II_beta (HMM E-Value=0)
          Length = 408

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 476 CQWYSTTNRLGRASSERFQWYLVPDKNAATSEIFFYIYNRKFN 604
           C+ Y+  NR  RA + RFQ  +  DKNA   + ++  Y +  N
Sbjct: 296 CRKYTVFNRFDRAVANRFQNDVKCDKNALPGDRWYRFYGKAGN 338


>SB_58346| Best HMM Match : HIG_1_N (HMM E-Value=5.8)
          Length = 160

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 123 KQRQRTSRNYFEVDIRQNSQSRRFFVQTVDYRIER 227
           KQ QRT+R   E + R + ++R+  V T   R+ER
Sbjct: 66  KQTQRTTRKRHEANTRMHDETRKRHVTTQSNRVER 100


>SB_59267| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1444

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +1

Query: 88  DHAASIAKRLHTNNVSELQETISKLISDKIR 180
           +H     +RLH   VS+L + ISKL S+K R
Sbjct: 738 EHKLKEMQRLHGQEVSKLSKRISKLESEKRR 768


>SB_55933| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 390 FKPLWESNKLYFKIWNADSNSYLEFGEKDAN--GIQPLIGSEEPAAKDSS 533
           F P+WE     F I+N  S+     G K      ++P+I  +E   +D +
Sbjct: 257 FPPIWEDLSKLFIIYNQQSSDLYRKGYKSVRYVHVEPIITEDEIVEEDDT 306


>SB_35646| Best HMM Match : CMD (HMM E-Value=1.6e-13)
          Length = 116

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = +3

Query: 354 ISDNTNVRSSWVFKPLWESNKLYFKIWNADSNSYLE 461
           + +  + RS    K L ++NK+  +I+N D+N+Y+E
Sbjct: 5   VKEFNDYRSKMNEKLLADNNKVIKRIFNVDTNAYME 40


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
 Frame = +2

Query: 497 NRLGRASSERF--QW---YLVPDKNAAT-SEIFFYIYNRKFNDPIEINLKENSNDEQQLF 658
           +R  RA+++ +  +W   Y +P++ A T +E+    Y  +F  P+E++  +  N E Q+F
Sbjct: 106 DRYYRATTKNYFSKWPEAYPIPNQEAVTVAEVLVAHYISRFGVPLELHSDQGRNFELQVF 165


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,553
Number of Sequences: 59808
Number of extensions: 407204
Number of successful extensions: 1194
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)