Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0112
         (672 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112922-1|AAI12923.1|  218|Homo sapiens SCN1B protein protein.        31   5.0  
U12193-1|AAB97608.1|  218|Homo sapiens voltage-gated sodium chan...    30   6.6  
L16242-1|AAA61277.1|  218|Homo sapiens voltage-gated sodium chan...    30   6.6  
L10338-1|AAA60391.1|  218|Homo sapiens sodium channel beta-1 sub...    30   6.6  
DQ677665-1|ABQ01236.1|  218|Homo sapiens sodium channel beta-1 s...    30   6.6  
BT019923-1|AAV38726.1|  218|Homo sapiens sodium channel, voltage...    30   6.6  
BC067122-1|AAH67122.1|  218|Homo sapiens sodium channel, voltage...    30   6.6  
BC021266-1|AAH21266.2|  186|Homo sapiens SCN1B protein protein.        30   6.6  

>BC112922-1|AAI12923.1|  218|Homo sapiens SCN1B protein protein.
          Length = 218

 Score = 30.7 bits (66), Expect = 5.0
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFDNYEHNTSVVKKIHLEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>U12193-1|AAB97608.1|  218|Homo sapiens voltage-gated sodium channel
           beta-1 subunit protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>L16242-1|AAA61277.1|  218|Homo sapiens voltage-gated sodium channel
           type I, beta subunit protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>L10338-1|AAA60391.1|  218|Homo sapiens sodium channel beta-1
           subunit protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>DQ677665-1|ABQ01236.1|  218|Homo sapiens sodium channel beta-1
           subunit precursor protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>BT019923-1|AAV38726.1|  218|Homo sapiens sodium channel,
           voltage-gated, type I, beta protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>BC067122-1|AAH67122.1|  218|Homo sapiens sodium channel,
           voltage-gated, type I, beta protein.
          Length = 218

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 116 SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 173


>BC021266-1|AAH21266.2|  186|Homo sapiens SCN1B protein protein.
          Length = 186

 Score = 30.3 bits (65), Expect = 6.6
 Identities = 11/58 (18%), Positives = 29/58 (50%)
 Frame = +1

Query: 37  SAEYNKQLYDSVISGDYDHAASIAKRLHTNNVSELQETISKLISDKIRNLVDFSYRLW 210
           S +Y   +Y  +   +Y+H  S+ K++H   V +    ++ ++S+ +  ++     +W
Sbjct: 84  SGDYECHVYRLLFFENYEHNTSVVKKIHIEVVDKANRDMASIVSEIMMYVLIVVLTIW 141


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,561,329
Number of Sequences: 237096
Number of extensions: 1791875
Number of successful extensions: 7380
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7380
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7647512560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)