Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0112
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase prot...    27   9.2  
AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase prot...    27   9.2  
AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical ...    27   9.2  

>AF025459-6|AAN63405.1|  328|Caenorhabditis elegans Fumarase protein
           1, isoform b protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 85  YDHAASIAKRLHTNNVSELQETI 153
           YD+AA IAK  H N  + +QE +
Sbjct: 283 YDNAAKIAKTAHKNGTTLVQEAV 305


>AF025459-5|AAB70982.1|  501|Caenorhabditis elegans Fumarase protein
           1, isoform a protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 85  YDHAASIAKRLHTNNVSELQETI 153
           YD+AA IAK  H N  + +QE +
Sbjct: 456 YDNAAKIAKTAHKNGTTLVQEAV 478


>AF016436-1|AAC25897.3|  292|Caenorhabditis elegans Hypothetical
           protein F38H12.5 protein.
          Length = 292

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
 Frame = -2

Query: 134 LTLFVCSRLAIDAAW----S*SPDITLSY----NCLLYSALIVW 27
           +T+F C++L +D  W      SPD+TL Y      +LYS  I++
Sbjct: 18  ITIFFCAKLLLDIYWFKTLKRSPDLTLFYFRFLMDILYSITIIF 61


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,928,764
Number of Sequences: 27780
Number of extensions: 312737
Number of successful extensions: 944
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)