Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0112
         (672 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.1  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   8.1  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.1  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
 Frame = +3

Query: 282 IKITDAKYGYSIKLTPGQNKAIIN----ISDNTNVRSSWVFKPLWESNKLYFKIWNADSN 449
           +++ D +Y   +  T G  +A+ N     ++  N+RS+    P     K  +++WN    
Sbjct: 135 LQVFDCRY---VTTTSGMFEALCNHIKYSTNKGNIRSAITIFPQRTDGKHDYRVWNHQLI 191

Query: 450 SYLEFGEKD 476
           SY  +   D
Sbjct: 192 SYAGYKNPD 200


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 581 YIYNRKFNDPIEINLKENSNDEQQLFGD 664
           YIYN  F+D  E  + + + +  Q+  D
Sbjct: 323 YIYNNPFSDVEERRVSKTAMNSNQIVSD 350


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 342 AIINISDNTNVRSSWVFKPLWESNKLYFKIW 434
           A++  S    V   W+F  LW S  L   +W
Sbjct: 117 AVLPFSATWEVFKVWIFGDLWCSIWLAVDVW 147


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 540 WCPTKMPLRRRYFFIFTIASLTILSRLTSKRTAMMSNS 653
           W    M L R + +IFTIAS+     +  +  A+  N+
Sbjct: 478 WGFVAMVLDRLFLWIFTIASIVGTFIILCEAPALRDNT 515


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 437 IPNFEVELVALPQWLEYPT 381
           +P+F  +LV +  WL+ P+
Sbjct: 154 VPSFVKDLVRVVSWLQEPS 172


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 437 IPNFEVELVALPQWLEYPT 381
           +P+F  +LV +  WL+ P+
Sbjct: 154 VPSFVKDLVRVVSWLQEPS 172


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 230 ISLDPVVHSLYEKSTRLRILSDINFE 153
           ++L PV H+LY  S     L  +N E
Sbjct: 255 MALSPVTHNLYYNSPSSENLYYVNTE 280


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/42 (21%), Positives = 19/42 (45%)
 Frame = +2

Query: 530 QWYLVPDKNAATSEIFFYIYNRKFNDPIEINLKENSNDEQQL 655
           Q ++ P +N      F+   N   +   ++  K+N  +EQ +
Sbjct: 128 QKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQNKEEEQTI 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,067
Number of Sequences: 438
Number of extensions: 4313
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)