Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0112
         (672 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g23280.1 68417.m03355 protein kinase, putative similar to rec...    33   0.17 
At4g23270.1 68417.m03354 protein kinase family protein contains ...    33   0.23 
At4g23310.1 68417.m03359 receptor-like protein kinase, putative ...    32   0.30 
At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190...    32   0.40 
At5g53640.1 68418.m06663 F-box family protein contains F-box dom...    31   0.53 
At1g02810.1 68414.m00239 pectinesterase family protein contains ...    31   0.92 
At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase, puta...    29   2.8  
At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast ...    29   2.8  
At2g37420.1 68415.m04589 kinesin motor protein-related                 29   3.7  
At1g23670.2 68414.m02987 expressed protein contains Pfam profile...    29   3.7  
At5g63590.1 68418.m07983 flavonol synthase, putative similar to ...    28   4.9  
At1g23020.1 68414.m02876 ferric-chelate reductase, putative simi...    28   4.9  
At1g13470.1 68414.m01578 expressed protein                             28   6.5  
At5g19540.1 68418.m02327 expressed protein                             27   8.6  

>At4g23280.1 68417.m03355 protein kinase, putative similar to
           receptor-like protein kinase 4 (gi:13506745), 5
           (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 656

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 16/53 (30%), Positives = 30/53 (56%)
 Frame = +1

Query: 130 VSELQETISKLISDKIRNLVDFSYRLWTTGSREIITDNFPIHSDYFTTTELSK 288
           VS ++ +    +   I NLV +++RLW+ GS   + D  P   D + T+E+++
Sbjct: 530 VSGMKNSSLDQMDGSISNLVTYTWRLWSNGSPSELVD--PSFGDNYQTSEITR 580


>At4g23270.1 68417.m03354 protein kinase family protein contains
           Pfam PF00069: Protein kinase domain
          Length = 645

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +1

Query: 130 VSELQETISKLISDKIRNLVDFSYRLWTTGSREIITDNFPIHSDYFTTTELSK 288
           +S ++ +    + + + NLV +++RLW+ GS   + D  P   D + T+E+++
Sbjct: 522 ISGMKNSSLYQMDESVGNLVTYTWRLWSNGSPSELVD--PSFGDNYQTSEITR 572


>At4g23310.1 68417.m03359 receptor-like protein kinase, putative
           similar to receptor-like protein kinase 4 (gi:13506745),
           5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
           thaliana; contains Pfam protein kinase domain PF00069
          Length = 830

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 14/53 (26%), Positives = 31/53 (58%)
 Frame = +1

Query: 130 VSELQETISKLISDKIRNLVDFSYRLWTTGSREIITDNFPIHSDYFTTTELSK 288
           +S ++ +    + D + NLV +++RLW+ GS+  + D  P   D + T ++++
Sbjct: 704 ISGMKNSSLYQMDDSVSNLVTYTWRLWSNGSQLDLVD--PSFGDNYQTHDITR 754


>At4g03200.1 68417.m00437 expressed protein contains Pfam PF03190:
           Protein of unknown function, DUF255
          Length = 818

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +3

Query: 375 RSSWVFKPLWESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSEEPAAKDSSGIWCPTK 554
           R+S + K   ES K YF + N+    Y+E  EK A  I+  +  E+      S    P+K
Sbjct: 533 RASKILKAEPESTKYYFPVVNSQPEDYIEVAEKAALFIRGNLYDEQSRRLQHSYRQGPSK 592

Query: 555 MP 560
            P
Sbjct: 593 AP 594


>At5g53640.1 68418.m06663 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 917

 Score = 31.5 bits (68), Expect = 0.53
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +3

Query: 363 NTNVRSSWVFKPLWESNKLYFKIWNADSNSYLEFGEK--DANGI 488
           +T  RS W++ P  E N LYF     D N+++ FG+K  D+N +
Sbjct: 520 STRWRSLWLWLPCLELNSLYF----PDFNAFVSFGDKFFDSNRV 559


>At1g02810.1 68414.m00239 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 579

 Score = 30.7 bits (66), Expect = 0.92
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +3

Query: 51  QTIIRQCYIWRL*PRRIYC*TATYKQRQRTSRNYFEVDIRQNSQSRRFFVQTVDYRIERN 230
           QT+     I +  P   YC  + +   Q   + Y    IR++    R F++TVD  I+RN
Sbjct: 23  QTLSNSSTICKTTPDPKYC-KSVFPHSQGNVQQYGCFSIRKSLSQSRKFIRTVDRYIKRN 81

Query: 231 HH 236
            H
Sbjct: 82  AH 83


>At3g14440.1 68416.m01830 9-cis-epoxycarotenoid dioxygenase,
           putative / neoxanthin cleavage enzyme, putative /
           carotenoid cleavage dioxygenase, putative similar to
           9-cis-epoxycarotenoid dioxygenase GB:AAF26356
           [GI:6715257][Phaseolus vulgaris]
          Length = 599

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/94 (19%), Positives = 45/94 (47%), Gaps = 3/94 (3%)
 Frame = +3

Query: 192 FFVQTVDYRIERNHHR*LSNTFRLFYNDRAIKITDAKYGYSIKLTP-GQNKAIINISDNT 368
           F+ +     ++  H   ++N   +++N R + +++    Y +++TP G  K +     + 
Sbjct: 229 FYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITPNGDLKTVGRFDFDG 288

Query: 369 NVRSSWVFKPLW--ESNKLYFKIWNADSNSYLEF 464
            + S+ +  P    ES +L+   ++  S  YL++
Sbjct: 289 QLESTMIAHPKVDPESGELFALSYDVVSKPYLKY 322


>At1g35680.1 68414.m04436 50S ribosomal protein L21, chloroplast /
           CL21 (RPL21) identical to 50S ribosomal protein L21,
           chloroplast precursor (CL21) [Arabidopsis thaliana]
           SWISS-PROT:P51412
          Length = 220

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -2

Query: 464 EFKVGIGVRIPNFEVELVALPQWLEYPTAPHVSI 363
           +++  IG R PN  + +  +  + EYP +P+V++
Sbjct: 182 KYRRNIGHRQPNTRIRITGITGYEEYPASPNVAV 215


>At2g37420.1 68415.m04589 kinesin motor protein-related 
          Length = 1039

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +3

Query: 606 ILSRLTSKRTAMMSNSFSEI 665
           ILS+LTSK+TAM+S++ S I
Sbjct: 774 ILSKLTSKKTAMISDASSNI 793


>At1g23670.2 68414.m02987 expressed protein contains Pfam profile
           PF02713: Domain of unknown function DUF220
          Length = 264

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 500 RLGRASSERFQWYLVPDKNAATSEIFFYIYNRKF 601
           +L RAS ++  WY  P K   T+E   Y  N KF
Sbjct: 47  KLWRASDKKSPWYDYPPKVKVTNEKDLYHLNMKF 80


>At5g63590.1 68418.m07983 flavonol synthase, putative similar to
           SP|Q96330 Flavonol synthase 1 (EC 1.14.11.-) (FLS 1)
           {Arabidopsis thaliana}; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 308

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +3

Query: 375 RSSWV---FKPLWESNKLYFKIWNADSNSYLEFGEKDANGIQPL 497
           R++WV   F  +W  +++  K W  +   Y+E  E+ A+ I+ L
Sbjct: 97  RNAWVDHLFHRIWPPSRVNHKFWPKNPPEYIEVNEEYASHIKKL 140


>At1g23020.1 68414.m02876 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 693

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/63 (31%), Positives = 30/63 (47%)
 Frame = +3

Query: 399 LWESNKLYFKIWNADSNSYLEFGEKDANGIQPLIGSEEPAAKDSSGIWCPTKMPLRRRYF 578
           L+ S+ L + I+   +N   +  E D  GI  L G  E A      +W  T   +RRR+F
Sbjct: 219 LFTSHGLCYCIYWISTNQVSQMLEWDRTGISHLAG--EIALVAGLLMWATTFPAIRRRFF 276

Query: 579 FIF 587
            +F
Sbjct: 277 EVF 279


>At1g13470.1 68414.m01578 expressed protein
          Length = 379

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +3

Query: 426 KIWNADSNSYLEFGEK-DANGIQPLIGSEEPAAKDSS 533
           K WNA+ ++  +FG K DA GI   I SE P+  ++S
Sbjct: 171 KYWNAEYSTSEDFGLKDDAKGIYTEIRSELPSDFNTS 207


>At5g19540.1 68418.m02327 expressed protein
          Length = 462

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 192 FFVQTVDYRIERNHHR*LS-NTFRLFYNDRAIKITDAKYGYSIKLTPGQNKAIINISDNT 368
           F +  +DY  E  +H  L   TF+L   ++     ++ + ++  +T    KA+I  +  T
Sbjct: 193 FQLDCLDYDTENWYHADLDFETFQLLQKEKG----ESFFSFARDMTIRSTKAMIQPALVT 248

Query: 369 NVRSSWVFKPLWES 410
             R +W  K LW S
Sbjct: 249 EGRDTWRSKLLWVS 262


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,772,300
Number of Sequences: 28952
Number of extensions: 282057
Number of successful extensions: 871
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)