Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0111
         (655 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_46604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_36688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 310

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 21/69 (30%), Positives = 39/69 (56%)
 Frame = -1

Query: 655 VFIYNSCIMSQLRYTQIHSNQDISSSLGYITQYISITLAILVDRFRNIVIYFSIDFFIIK 476
           V I+   ++S L  T   SN   +S + Y+T  I++ + ++V  F +I++ ++  F IIK
Sbjct: 119 VLIWLLALISALAQTT-WSNHPRASEI-YLTYDITVLVVLVVLPFISIMVAYTSMFLIIK 176

Query: 475 *GLLRVGKV 449
            G +R  K+
Sbjct: 177 RGKMRRKKL 185


>SB_46604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 517

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -2

Query: 471 DFYV*GKYEKLFISE*LLLVFYFNKETKLILQTFTIE 361
           D+Y  G Y++L++ +  +L+ Y NK+T + + + T++
Sbjct: 21  DYYDDGDYDRLYLRQGKMLLVYPNKKTIVRIVSLTLD 57


>SB_15415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1390

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 473 LFYNKKINRKVNNDISKSVHQYRQCNRNV 559
           + Y+K ++R + ND S+ VH  R  N NV
Sbjct: 637 VLYSKVVSRPLANDTSEFVHMLRTNNSNV 665


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,592,063
Number of Sequences: 59808
Number of extensions: 260075
Number of successful extensions: 561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)