Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0108
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces p...   105   6e-24
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    62   9e-11
SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase ...    53   3e-08
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    38   0.001
SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase...    38   0.002
SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces pombe...    29   0.80 
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    27   2.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   7.5  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    25   7.5  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    25   7.5  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    25   9.9  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   9.9  

>SPBC1773.05c |tms1||hexitol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 360

 Score =  105 bits (252), Expect = 6e-24
 Identities = 44/84 (52%), Positives = 57/84 (67%)
 Frame = +2

Query: 257 GVPCRYCEFCKTGRYHLCPDMIFCATPPVHGNLVRYYKHAADFCFKLPDHVTMEEGALLE 436
           G  CR C++C++GRY+LCP M F ATPP  G L  YY    DFC KLP  +++EEGAL E
Sbjct: 94  GCVCRLCDYCRSGRYNLCPHMEFAATPPYDGTLRTYYITTEDFCTKLPKQISVEEGALFE 153

Query: 437 PLAVGIHACKRGGVSAGHVVLVLG 508
           P++V +HA  RG +  G  VLV+G
Sbjct: 154 PMSVAVHAMTRGNLKCGSRVLVMG 177



 Score = 89.4 bits (212), Expect = 4e-19
 Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
 Frame = +3

Query: 6   LLYKPNDLRLVQTPIPEISED-EVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHE 182
           +L K  D  +   P   +++D +V + +   GICGSDVHYW++G  G F+L++PMI+GHE
Sbjct: 9   VLRKKMDTAIEDRPGQTLTDDHQVKVAIKATGICGSDVHYWKEGGIGDFILKKPMILGHE 68

Query: 183 ASGVVAKIGSKVKNLTVGDRVAIEPAC 263
           ++GVV ++G  V +L  GD VA+EP C
Sbjct: 69  SAGVVVEVGKGVSSLKPGDPVAVEPGC 95



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 541 AKAFGAHKVLIIDILQSRLDFA-KSLGADYTLLIGKDSNEA 660
           AKA+GA  ++ +D   SR++FA K +GA     I    NE+
Sbjct: 189 AKAYGAIDIVAVDASPSRVEFAQKYVGAKPFTPIAAKENES 229


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 61.7 bits (143), Expect = 9e-11
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
 Frame = +3

Query: 18  PNDLRLVQTPIPEISEDEVLLRMDCVGICGSDVHYWQKGQCGHFVL--EEPMIMGHEASG 191
           P +++  + P+ E  +DEVL+ +   G+C +D+H  Q    G + L  + P+I GHE +G
Sbjct: 18  PENVKFEEVPVAEPGQDEVLVNIKYTGVCHTDLHALQ----GDWPLPAKMPLIGGHEGAG 73

Query: 192 VVAKIGSKVKNLTVGDRVAIE 254
           VV K+G+ V  L +GDRV ++
Sbjct: 74  VVVKVGAGVTRLKIGDRVGVK 94



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 1/82 (1%)
 Frame = +2

Query: 266 CRYCEFCKTGRYHLCPDMIFCATPPVHGNLVRYYKHAADFCFKLPDHVTMEEGALLEPLA 445
           C  CE+C      +CP  I  +   V G    Y    A     +P+ V +E  A +    
Sbjct: 100 CGNCEYCMKAEETICPH-IQLSGYTVDGTFQHYCIANATHATIIPESVPLEVAAPIMCAG 158

Query: 446 VGIH-ACKRGGVSAGHVVLVLG 508
           +  + A K   V  G  + + G
Sbjct: 159 ITCYRALKESKVGPGEWICIPG 180


>SPBC1198.01 |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 423

 Score = 53.2 bits (122), Expect = 3e-08
 Identities = 29/80 (36%), Positives = 48/80 (60%), Gaps = 2/80 (2%)
 Frame = +3

Query: 18  PNDLRLVQTPIPEISED-EVLLRMDCVGIC-GSDVHYWQKGQCGHFVLEEPMIMGHEASG 191
           P ++++ + P P I+   +V+++     IC GSD H +     G   +E+  I+GHE+ G
Sbjct: 45  PLNVKIAEVPKPTITHPKDVIVKTTACTICSGSDSHIFSGEMPG---IEKGAILGHESCG 101

Query: 192 VVAKIGSKVKNLTVGDRVAI 251
           +VA+ G +V NL +GDRV I
Sbjct: 102 IVAEKGDEVNNLEIGDRVVI 121


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
 Frame = +3

Query: 18  PNDLRLVQTPIPEISEDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVV 197
           P  +  VQ   P + E  V +++   G+C +D  Y   G+    +   P+I+GHE +G+V
Sbjct: 24  PLSIENVQVFPPRVHE--VRIKIVNSGVCHTDA-YTLSGKDPEGLF--PVILGHEGAGIV 78

Query: 198 AKIGSKVKNLTVGDRV--AIEPACR 266
             +G +V  + VGD V     P C+
Sbjct: 79  ESVGPQVTTVQVGDPVIALYTPECK 103



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 8/15 (53%), Positives = 13/15 (86%)
 Frame = +2

Query: 266 CRYCEFCKTGRYHLC 310
           C+ C+FCK+G+ +LC
Sbjct: 102 CKTCKFCKSGKTNLC 116


>SPBC1539.07c |||glutathione-dependent formaldehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +3

Query: 69  EVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVVAKIGSKVKNLTVGDRVA 248
           EV +++D   +C +D  Y   G         P+++GHE +G+V  IG  V N+  GD V 
Sbjct: 36  EVRVKVDWSAVCHTDA-YTLSGVDPEGAF--PIVLGHEGAGIVESIGEGVINVRPGDHVI 92

Query: 249 I--EPACR 266
           +   P C+
Sbjct: 93  LLYTPECK 100



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +2

Query: 266 CRYCEFCKTGRYHLC 310
           C+ C+FC++G+ +LC
Sbjct: 99  CKECKFCRSGKTNLC 113


>SPBC1773.06c |||alcohol dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 28.7 bits (61), Expect = 0.80
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 153 LEEPMIMGHEASGVVAKIGSKVKNLTVGDRV 245
           L+ P++ G + +G++ K+G  V+    GD V
Sbjct: 58  LQLPVVPGSDGAGIIEKVGEDVEGFEKGDSV 88


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 213 KVKNLTVGDRVAIEPACRVG--TASSVRQDDTT 305
           +V  + +  RVA E  CR+G     S+R DDTT
Sbjct: 151 RVAAVNLAKRVAAEQGCRLGEQVGYSIRFDDTT 183


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 6/31 (19%), Positives = 13/31 (41%)
 Frame = +3

Query: 414 WKKERYWSPSRWAFTRARGAESRRDTWCWYW 506
           W +++      W     +  +   D WCW++
Sbjct: 821 WLEKKADKARSWFLKAVKADQDNGDVWCWFY 851


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +3

Query: 213 KVKNLTVGDRVAIEPACRVG--TASSVRQDDTTYALT 317
           +V  ++V  RVA E  CRVG     ++R +D T  +T
Sbjct: 566 RVAAMSVAKRVAEEVGCRVGEEVGYTIRFEDKTSRMT 602


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 412 GHVIRKLEAKISCVLVISDEVSVYWGRGAED 320
           GH ++ +EAK    + I  + SV  G+G  D
Sbjct: 211 GHTLKDMEAKSGAKIAIRGKGSVKEGKGRSD 241


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 33   LVQTPIPEISEDEVLLRMDC 92
            LVQ+ I E SED + L +DC
Sbjct: 1489 LVQSAIRESSEDAIALAVDC 1508


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 237 DRVAIEPACRVGTASSVRQDDTTYALT*SSAPRPQYTETSS 359
           D VA EPA    + SS  + +T  A   ++ P P   +TS+
Sbjct: 95  DEVADEPAEAPASTSSTPKVETAAAAAPAATPAPAPAQTSA 135


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 195 VAKIGSKVKNLTVGDRVAIEPACRVGTASSVRQDDTTYALT*SSAPRPQYT-ETSSDITS 371
           V+ I + VK  T         +  V ++SSV+   +T   + SSA  PQ T  TSS++ S
Sbjct: 449 VSSISTSVKQPTAS---VASSSVSVPSSSSVQPQSSTPISSSSSASSPQSTLSTSSEVVS 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,191
Number of Sequences: 5004
Number of extensions: 59704
Number of successful extensions: 178
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)