Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0108
         (670 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)           139   2e-33
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   5e-10
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   1e-06
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)                     30   1.5  
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_42197| Best HMM Match : rve (HMM E-Value=0.017)                     29   3.4  
SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)                       29   4.5  
SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)                    29   4.5  
SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_9859| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.0  
SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_18868| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_56378| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
          Length = 303

 Score =  139 bits (336), Expect = 2e-33
 Identities = 57/87 (65%), Positives = 67/87 (77%)
 Frame = +2

Query: 257 GVPCRYCEFCKTGRYHLCPDMIFCATPPVHGNLVRYYKHAADFCFKLPDHVTMEEGALLE 436
           G PCR C +CK GRY+LC  M FCATPP HG+L R Y H ADFC+KLPDHV++EEGALLE
Sbjct: 84  GTPCRTCSYCKKGRYNLCAKMNFCATPPYHGSLCRRYNHQADFCYKLPDHVSLEEGALLE 143

Query: 437 PLAVGIHACKRGGVSAGHVVLVLGRDP 517
           PL+VG+HAC R G++ G  VLV G  P
Sbjct: 144 PLSVGVHACNRAGITIGSNVLVCGAGP 170



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 47/93 (50%), Positives = 58/93 (62%)
 Frame = +3

Query: 3   ALLYKPNDLRLVQTPIPEISEDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHE 182
           A+L+  +DLRLVQ          V + M  VGICGSDVHYW+ G  G FVL  PM++GHE
Sbjct: 9   AVLHGIDDLRLVQ----------VQISMHTVGICGSDVHYWKHGCIGDFVLTAPMVLGHE 58

Query: 183 ASGVVAKIGSKVKNLTVGDRVAIEPACRVGTAS 281
           +SGV+  +G  V +L  GDRVAIEP     T S
Sbjct: 59  SSGVICAVGEGVSDLKEGDRVAIEPGTPCRTCS 91



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +1

Query: 541 AKAFGAHKVLIIDILQSRLDFAKSLGADYTLLI 639
           AKA GA KV I D+ + RL  A+ LGADYT+ +
Sbjct: 179 AKACGASKVAITDLDEGRLKKARELGADYTIKV 211


>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 395

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
 Frame = +3

Query: 27  LRLVQTPIPEISE-DEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVVAK 203
           L ++  P+P +S   EV++++   GIC  D+   +    G     + +++GHE SGVV+ 
Sbjct: 60  LSVITRPVPHVSNPSEVIVKVAYSGICDRDLQILE----GELPAAKCVVLGHEFSGVVSD 115

Query: 204 IGSKVKNLTVGDRVAIEPACRVGTASSVRQ 293
           +GS VKN+++GDRV + P     T  + R+
Sbjct: 116 VGSDVKNVSIGDRVVVNPNSSCNTCKACRR 145


>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 348

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 26/85 (30%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
 Frame = +3

Query: 21  NDLRLVQTPIPEI-SEDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVV 197
           N L ++  P P + S  +V++++    + G+D+H  +    G     + +I+GH+  G+V
Sbjct: 10  NHLSVITRPTPHVQSPRDVVVKIAYSAVSGTDLHVLE----GRIDCAKSIILGHQFVGIV 65

Query: 198 AKIGSKVKNLTVGDRVAIEPACRVG 272
            +IG+ V++++VGDRV I P    G
Sbjct: 66  KEIGADVQHVSVGDRVVINPLTSCG 90



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 266 CRYCEFCKTGRYHLC--PDMIFCATPPVHGNLVRYYKHAADFCFKLPDHVTMEEGALLEP 439
           C  C+FC  G+ HLC             +G   ++ + +A     LP  VT E+    EP
Sbjct: 89  CGICDFCLKGQPHLCKVEGKNTAIGIKRNGGWAQFCRLSAKNVIPLPHQVTFEQALFSEP 148

Query: 440 LA 445
           ++
Sbjct: 149 MS 150


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 253  SMATRSPTVRFLTFEPILATTPEASCPMIIGSSSTKCP 140
            S++T  P V+F T  PI + +PE +  +   S +T  P
Sbjct: 1010 SLSTAEPQVKFTTAAPISSESPETTAAVTTASPTTDAP 1047


>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
          Length = 316

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +3

Query: 18  PNDLRLVQTPIPEISEDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGVV 197
           P  + +   P P++ E EVL+R+    +  +D    +KG        E  I+G E SG+V
Sbjct: 38  PESMYIGDAPRPKLKETEVLIRVHFTALNRADT-LQRKGSYPP-PPGESEILGLEVSGIV 95

Query: 198 AKIGS 212
            ++GS
Sbjct: 96  EELGS 100


>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/68 (27%), Positives = 32/68 (47%)
 Frame = +3

Query: 15  KPNDLRLVQTPIPEISEDEVLLRMDCVGICGSDVHYWQKGQCGHFVLEEPMIMGHEASGV 194
           KP  +  ++   P+  E  V +++   G+C +D  Y   G     +   P I+GHE  G+
Sbjct: 14  KPLSIETIEVAPPKAHE--VRIKILATGVCHTDA-YTLSGVDPEGLF--PCILGHEGGGI 68

Query: 195 VAKIGSKV 218
           V  +G  V
Sbjct: 69  VESVGEGV 76


>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
          Length = 602

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 6/48 (12%)
 Frame = +2

Query: 332 TPPVHGNLVRYYKHAADF--CFKL-PDHVTMEEGA---LLEPLAVGIH 457
           TP   G LV  YK+  +    FK+ P H+T+EEGA   +  P +V +H
Sbjct: 108 TPLTKGKLVNSYKNRFEGLGAFKMRPYHITLEEGAEPVIHPPSSVPVH 155


>SB_27928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 300 TTYALT*SSAPRPQYTETSSDITSTQLIFASSFLIT 407
           T+Y  T S  P P YT T+S  T+T     +S+  T
Sbjct: 48  TSYTSTTSYTPTPSYTPTTSYTTTTSYTSTTSYTTT 83


>SB_49176| Best HMM Match : Suf (HMM E-Value=0.6)
          Length = 594

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 516 HRPPYHAHS*SLWSTQSTHNRYPSEP 593
           +RPP H H   ++ TQ THN    EP
Sbjct: 352 YRPPKHDHLKEMYVTQYTHNFDSEEP 377


>SB_16935| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2204

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +2

Query: 275  CEFCKTGRYHLCPDMIFCATPPVH 346
            C    TG  H+C D+ FCA  P H
Sbjct: 1782 CRVGFTGNGHICNDIDFCAPNPCH 1805


>SB_15534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1041

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
 Frame = +2

Query: 332 TPPVHGNLVRYYKHAADF--CFKL-PDHVTMEEGA---LLEPLAVGIH 457
           TP   G LV  YK   +    FK+ P H+T+EEGA   +  P +V +H
Sbjct: 243 TPLTKGKLVNSYKDRFEGLGAFKMRPYHITLEEGAEPVIHPPRSVPVH 290


>SB_57921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 150 VLEEPMIMGHEASGVVAKIGSKVKNLTVGDRV 245
           V E P+I G + SGVV K G +V+    G  V
Sbjct: 137 VEEFPLICGRDFSGVVVKTGRRVRRFRPGMEV 168


>SB_9859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 270

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +3

Query: 150 VLEEPMIMGHEASGVVAKIGSKVKNLTVGDRV 245
           V E P+I G + SGVV K G +V+    G  V
Sbjct: 65  VEEFPLICGRDFSGVVVKTGRRVRRFRPGMEV 96


>SB_40330| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 153

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 273 TASSVRQDDTTYALT*SSAPRPQYTETSSDITSTQLIFASSFLIT 407
           T+++     T+Y  T S  P P YT T S  +ST     +S+  T
Sbjct: 105 TSTTSYTSTTSYTPTTSYTPTPSYTSTPSYTSSTSYTPTTSYTCT 149


>SB_18868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 516

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 392 KLPDHVTMEEGALLEPLAVGIHACKRGGVSAGHVVLVLGRDPSASLPCSQL 544
           + P   T E GA    LAVG   CK+  V+ GH +L L R+  + L  ++L
Sbjct: 168 RTPKAKTKERGARPNTLAVG--GCKKSKVTQGH-ILELSRNVESLLEENRL 215


>SB_56378| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
 Frame = +3

Query: 15  KPNDLRLVQTPIPEISEDEVLLRMDCV--GI-CGSDVHYWQKGQCGHFVLEEPMIMGHEA 185
           KPNDLR ++T       +++  + + V  GI C  D    + G+   F LE    MG EA
Sbjct: 28  KPNDLR-IKTVKQTTKSEKIAKQFEKVFDGIGCLKD----KTGEPIEFKLE----MGPEA 78

Query: 186 SGVVAKIGSKVKNLTVGDRVAIEPACRVGTASSVRQDDT-TYALT*SSAPRPQYTETSSD 362
           + V  +  +    L    +  ++     G    V + DT T+       P+P+YT+T  +
Sbjct: 79  TPVAQRPRNVAYYLQQPLKKWLDQGVEQGIFEPVPEGDTITWYSPLVGQPKPKYTKTDKE 138

Query: 363 ITSTQLIFAS 392
               Q+I AS
Sbjct: 139 KLKPQMIRAS 148


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 511  PSQYQHHVSRRDSAPLARVNAHREGLQ*RS-FFHGH 407
            PSQ+QH V++++ A L    A  E L   S ++HGH
Sbjct: 1042 PSQWQHVVTKKNPADLCTRGATPEELSDSSLWWHGH 1077


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,266,243
Number of Sequences: 59808
Number of extensions: 522634
Number of successful extensions: 1583
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)