Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0107
         (661 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    25   0.73 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.9  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   6.8  
AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine 3-mon...    21   9.0  
AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine 3-mon...    21   9.0  
AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine 3-mon...    21   9.0  

>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 24.6 bits (51), Expect = 0.73
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 276 WINEIPTVPI 305
           W+NEIPT+P+
Sbjct: 321 WLNEIPTMPV 330


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 446 SSLKNHYFHCFITYSVGRK 502
           SS    +FHC+     GRK
Sbjct: 416 SSFFQQFFHCYCPIKFGRK 434


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 539 NTVRPPILSTGTASAQPSK**NNESSGFS--ATIARNDLPLML 417
           N   PPI S  T+  +P    N + SG++    I +  +P++L
Sbjct: 151 NDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVIL 193


>AY052622-1|AAL15470.1|  290|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 290

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 472 LFHYLLGWAEAVPVDNIGGRTVFRSKR 552
           L H L G   +VP D + G+ ++   R
Sbjct: 84  LLHDLKGRTTSVPYDALTGQCIYSISR 110


>AY052393-1|AAL15467.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 472 LFHYLLGWAEAVPVDNIGGRTVFRSKR 552
           L H L G   +VP D + G+ ++   R
Sbjct: 84  LLHDLKGRTTSVPYDALTGQCIYSISR 110


>AY052391-1|AAL15465.1|  445|Tribolium castaneum kynurenine
           3-monooxygenase protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +1

Query: 472 LFHYLLGWAEAVPVDNIGGRTVFRSKR 552
           L H L G   +VP D + G+ ++   R
Sbjct: 84  LLHDLKGRTTSVPYDALTGQCIYSISR 110


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,302
Number of Sequences: 336
Number of extensions: 3177
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17073220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)