Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0107
         (661 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ...    28   1.4  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   5.5  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   5.5  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    25   7.3  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   9.7  
SPBC800.10c |||EPS15 repeat family actin cortical patch componen...    25   9.7  

>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/56 (23%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -3

Query: 659 DRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPRHHSAR-LERNTVRPPILSTGTASA 495
           D     + LP+ + P    +   K+ ++F P+HH  + +  ++ +P   +T  A+A
Sbjct: 148 DESVIDIPLPSEEYPFEDPKPREKKNKSFKPKHHKKQDINASSAQPKSTTTTEAAA 203


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 436 FRAIVAEKPLLSLFHYLLGWAEAVPVD 516
           F++    +P   LFHYL G+    P+D
Sbjct: 312 FKSSQKHQPRNWLFHYLFGFGSTEPID 338


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = -2

Query: 573 SATSPLCTLGTKHRAPADIIDRHRFRPTE*VMKQ*K*WFFSDDRAKRSPTYATPLMSPYN 394
           S  +PL  LG     P D++ +HR    E  +   K   FS    +   TY  P MS   
Sbjct: 247 SGRAPLHLLGVSMNQPIDVVVQHRM--DEDYVAPFK--PFSGKGQRLGSTYMQPRMSQMP 302

Query: 393 ARL-ESSSTGSSFP 355
             L   +ST SS P
Sbjct: 303 GGLYTDTSTSSSVP 316


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = -1

Query: 241 GYLKRVIVTPAVYPRLLEFLHVDIQST 161
           G+++R+ V    YP LLE+L++ + S+
Sbjct: 76  GFIERISVILRDYPDLLEYLNIFLPSS 102


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 235  LKRVIVTPAVYPRLLEFLHVDIQSTGQKSHC 143
            L + IVT + + RLLE+L  D  S  Q S C
Sbjct: 1789 LTKRIVTLSDHYRLLEYLLKDESSCSQASQC 1819


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 231 LR*PNASSLISDAHEWINEIPTVPIYYLAKPQPRERAWE 347
           LR     +L S AH+ ++++P VP  +   P P+  + E
Sbjct: 741 LRFGKVDTLASLAHDDLDDLPAVPRIFSPPPLPKTPSGE 779


>SPBC800.10c |||EPS15 repeat family actin cortical patch component
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1116

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 572 PPRHHSARLERNTVRPPILSTGTASAQPS 486
           P +H+S     NT+R P L++  +SA  S
Sbjct: 744 PTQHNSFDAMHNTLRSPSLNSNNSSAHAS 772


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,713,215
Number of Sequences: 5004
Number of extensions: 53619
Number of successful extensions: 137
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)