Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0107
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0456 + 29521282-29522064 31 1.1
03_04_0006 + 16257288-16259522 30 1.9
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.3
06_01_0437 + 3101449-3101521,3101872-3102232,3103766-3103958,310... 29 4.3
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.3
04_01_0504 - 6597179-6597526 28 5.7
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.7
12_02_0077 - 13288916-13289659,13289689-13289691 28 7.6
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 7.6
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 7.6
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 7.6
>01_06_0456 + 29521282-29522064
Length = 260
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = -3
Query: 629 AWQC--PRTGSRGSFKRRRAFPPRHHSARLER----NTVRPPILSTGTAS 498
AW+C P +G+RG +RRR P S R R +T+RP + S +
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTTSRRCSRADRLDTLRPYVTSAAAGN 61
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 1.9
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -2
Query: 441 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 289
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.3
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 441 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 316
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>06_01_0437 +
3101449-3101521,3101872-3102232,3103766-3103958,
3104051-3104848,3104997-3105143,3106024-3106377
Length = 641
Score = 28.7 bits (61), Expect = 4.3
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +1
Query: 490 GWAEAVPVDNIGGRTVFRSKR--AEW*RGGNARRRLKLPRDPVRGHCQAGSLTGA 648
G A P IG +T+ R R A W RG A RR +LP G +AG G+
Sbjct: 25 GTANQSPNSQIG-QTLTRGPRTCAVWRRGRAAVRRRRLPAASAEGGAKAGRSLGS 78
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 570 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 659
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>04_01_0504 - 6597179-6597526
Length = 115
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +2
Query: 494 GRKRCRSIISAGARCFVPSVQSGDVAETLVA 586
GR+ CRS+++AGA P +SG A + A
Sbjct: 85 GRESCRSLLAAGAAWATPLDRSGRFAGAVAA 115
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 649 PPQSNSPPGSVLEPDHAGVLNGDE 578
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 384 ESSSTGSSFPADSPKPVPLAVVSLDSR 304
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 40 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 168
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 168
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -2
Query: 414 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 307
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,288,006
Number of Sequences: 37544
Number of extensions: 414284
Number of successful extensions: 1370
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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