Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0106
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0006 + 16257288-16259522 30 1.8
02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166... 30 1.8
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.2
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523... 29 4.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.6
12_02_0077 - 13288916-13289659,13289689-13289691 28 7.4
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555... 28 7.4
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647... 28 7.4
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 28 7.4
10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595 27 9.7
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585... 27 9.7
>03_04_0006 + 16257288-16259522
Length = 744
Score = 29.9 bits (64), Expect = 1.8
Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 427 AKRSP---TYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDSR*GQWE 275
A+RSP Y T L + ARL T PA SP +AV S + G W+
Sbjct: 162 ARRSPWTVVYGTNLRTGETARLTPRGTFDLSPAVSPSGKRVAVASWQGKPGLWD 215
>02_05_0110 +
25914110-25915006,25915726-25915797,25916411-25916699,
25916864-25916949,25917267-25917490,25917674-25917740,
25917830-25917889,25917995-25918078,25918475-25918555
Length = 619
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 245 LDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 144
LDDE YL R V + RLL+F++VD STG
Sbjct: 279 LDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -3
Query: 427 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 302
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>02_05_0042 +
25351648-25351724,25351983-25352010,25352311-25352373,
25352880-25352945,25353029-25353076,25353338-25353379,
25353499-25353714,25354066-25354188,25354352-25354564,
25354930-25355016,25355259-25355507,25356386-25356507,
25357135-25357225,25358467-25358882,25359489-25359609
Length = 653
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/60 (23%), Positives = 29/60 (48%)
Frame = -2
Query: 284 TVGISLIHSCRH*LDDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 105
T G+ ++ H + F + ++ V + RL++F+ VD+ + V+ R+G R
Sbjct: 10 TCGLRIMPDMEHQSEGRFFAWHIQIEVDHMLSERLMQFIDVDLHGVKAREKFVSVRKGTR 69
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 555 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 644
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 634 PPQSNSPPGSVLEPDHAGVLNGDE 563
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>12_02_0077 - 13288916-13289659,13289689-13289691
Length = 248
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 370 ESSSTGSSFPADSPKPVPLAVVSLDSR 290
++ S G S P DS + VP+ VV+L R
Sbjct: 3 DNQSLGKSLPKDSRRHVPVGVVALKKR 29
>12_01_0655 +
5546293-5546478,5546760-5546877,5550697-5550776,
5551329-5552345,5552523-5553344,5553528-5553800
Length = 831
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +2
Query: 26 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 154
C T RS N H + CL+ +H G NVI +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284
>04_04_0433 +
25163111-25163471,25163943-25164154,25164420-25164701,
25164794-25164916,25165511-25165664,25165754-25165965,
25166143-25166212,25166294-25166424
Length = 514
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Frame = +2
Query: 26 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 154
CT++ +R A W G G L HC P V+S +CS
Sbjct: 26 CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 27.9 bits (59), Expect = 7.4
Identities = 17/36 (47%), Positives = 20/36 (55%)
Frame = -3
Query: 400 PLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLDS 293
PL+ P AR SSTGSSFP S P ++ L S
Sbjct: 47 PLIHPTPARF-ISSTGSSFPPYSEPPPSAPMLELGS 81
>10_08_0398 - 17588202-17589280,17590154-17590373,17593350-17593595
Length = 514
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 559 FRHVTTLHAWNETPCARDIIDRAPFRPTE 473
FR + + E+P A D + PFRPTE
Sbjct: 231 FRPKSNSRSRPESPAASDAASQTPFRPTE 259
>05_02_0034 +
5856165-5856183,5858845-5859173,5859275-5859277,
5859440-5859517,5859623-5860090,5860378-5860437,
5860442-5860666,5860791-5860952,5861502-5861870,
5861950-5863390,5863598-5863701,5863744-5863779,
5863780-5863977,5864275-5864538
Length = 1251
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = -3
Query: 622 NSPPGSVLEPDHAGVLNGDERFRHVTTLHAWNETPCARDIIDRAP-FRPTE 473
N PP +H + D + WN R ++D AP F PTE
Sbjct: 92 NRPPIDYSRFEHISDEDSDVEIVEKDVIAKWNPAGARRPVLDEAPVFYPTE 142
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,826,768
Number of Sequences: 37544
Number of extensions: 397432
Number of successful extensions: 1238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -