Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0106
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   2.7  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   3.5  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   3.5  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   3.5  
At3g62370.1 68416.m07006 expressed protein                             28   6.1  
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic...    27   8.1  
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea...    27   8.1  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -3

Query: 406 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 296
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 209 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 99
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -2

Query: 209 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 99
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -3

Query: 637 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 521
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 622 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 527
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
           to gi_11935088_gb_AAG41964
          Length = 209

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -3

Query: 418 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 311
           SPT +  + SP  A  ++ +  +S P +SPK P P++
Sbjct: 41  SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77


>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           similar to WDR protein, form B (GI:14970593) [Mus
           musculus]
          Length = 1589

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 522 HRAPAILSTAHRSAQPS 472
           HRAP+ILS  H  A+PS
Sbjct: 273 HRAPSILSACHAIAKPS 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,361,684
Number of Sequences: 28952
Number of extensions: 291133
Number of successful extensions: 765
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 765
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)