Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0101
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.35 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   1.4  
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos...    26   2.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    26   3.3  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   4.3  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    25   4.3  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   5.7  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   5.7  
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom...    25   7.5  
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac...    25   7.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    24   9.9  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    24   9.9  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.35
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 347 ARKIRGRPENAGPDPVRNVRRFSRV 273
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 191  TRPGTGPXPLPVQTRHAPVLRANPYSEVTDPICRLP 84
            +RP T P P P + + APV + +    V  PI   P
Sbjct: 980  SRPRTAPIPEPEEQKKAPVEKKDAEKSVQAPIPAQP 1015


>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 473

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 203 ARTSTRPGTGPXPLPVQTRHAPV 135
           A+ S  P   P PL +QTR AP+
Sbjct: 410 AQFSPYPAVAPSPLALQTRGAPI 432


>SPAC2F7.03c |pom1||DYRK family protein kinase
            Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 193  RPDPAPVRIRFPSKPDTPRSSEPILIPKLRIQFAD 89
            RP+ AP R +F   P+   +  P  +P L +++ D
Sbjct: 1003 RPNTAPARQKFARPPNIETAPIPRPLPNLPMEYND 1037


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 88  FPYLHYSID*RLFTLETCCGYGYEPARHL 2
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +3

Query: 249 QKCIYLI*HSRKSSYVSDWIRTRVLRPSADLPSRKVVSVSFRARSARFCTTAVQRSAQNW 428
           Q  +YL      S Y +D  RTR++ PSA + +    ++       R   T V  S +  
Sbjct: 133 QYLVYLTTLYLDSPYTTDLQRTRLILPSAKIDTYTTYNIDGAELPNRVGNTLVYESRETI 192

Query: 429 HGQ 437
            G+
Sbjct: 193 TGE 195


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = -1

Query: 114 RSYGSNLPTSLTYIILSTRGSSPWRHAADMD 22
           + YGSN+ + +T  +L+ +     R+++DM+
Sbjct: 156 KEYGSNVDSLITSFVLTCKNLHRKRYSSDME 186


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 14/51 (27%), Positives = 22/51 (43%)
 Frame = -2

Query: 431 VPVLS*PLNGGRTESCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 279
           VP+   PL+   T+     T   RH  T  + +    N GPD + +   +S
Sbjct: 211 VPIFRIPLSDYETDDMDDGTPLQRHVATLNQYQSPIFNLGPDILEDEPSYS 261


>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 129 SQSLFRSYGSNLPTSLTYIILSTRGSSPWRHAADMDTN 16
           S S   SY  +L    +YI  S+ G S  + + D+D N
Sbjct: 257 SGSYSSSYSRHLDDRASYISRSSSGGSNAQRSEDLDVN 294


>SPAC4G9.13c |vps26|pep8|retromer complex subunit
           Vps26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 385 HDSVRPPFNGQLRTGTDKGN 444
           HD V+  F GQ+    DKGN
Sbjct: 61  HDGVKIEFIGQIENTYDKGN 80


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -1

Query: 180 HRSXSASRPNPTRPGPQSQSLFRSYGSNLPTS 85
           H+   AS P  T P  Q+      Y  NLP S
Sbjct: 405 HQRIPASTPTNTNPADQNPPCNTIYVGNLPPS 436


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 158 VQTRHAPVLRANPYSEVTDPI 96
           +++ H  +L  +PY +V DPI
Sbjct: 287 LKSYHLSILEVDPYFQVNDPI 307


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,992,491
Number of Sequences: 5004
Number of extensions: 41575
Number of successful extensions: 107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)