Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0101
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305 30 0.80
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 2.4
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 2.4
08_01_0025 - 184899-185384,185707-185940,187156-187341,188108-18... 27 5.6
06_03_0986 - 26574083-26574952 27 7.4
06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867 27 7.4
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 27 7.4
11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635 27 9.8
08_01_1056 + 10752363-10752503,10752711-10752771,10753483-107536... 27 9.8
03_02_0989 - 13006783-13007076,13007311-13007559,13010214-130103... 27 9.8
>01_06_0254 + 27915608-27915755,27915837-27916042,27917069-27917305
Length = 196
Score = 30.3 bits (65), Expect = 0.80
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = -1
Query: 174 SXSASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSPWRHAADMDTNR 13
S SAS P+P +P P S SL R+ S +Y G W A + R
Sbjct: 13 SLSASLPSPAQPAPASLSL-RAVSPRARLSASYAAFPIGGIGAWAAATPASSGR 65
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 191 TRPGTGPXPLPVQTRHAPVLRANPYSEVTDPICRLPL 81
T+P + L + RH P L+A P S + C+LPL
Sbjct: 100 TKPLSTGHSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -2
Query: 164 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 51
+P Q + A + A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>08_01_0025 -
184899-185384,185707-185940,187156-187341,188108-188158
Length = 318
Score = 27.5 bits (58), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 456 LDSRIPLVRASSELTVERRSYRIVPIAHETKPTRP 352
LD+ IP+ R E + E R I+P + P+ P
Sbjct: 274 LDNEIPITRTKIESSSEVRDLEILPTGNAALPSSP 308
>06_03_0986 - 26574083-26574952
Length = 289
Score = 27.1 bits (57), Expect = 7.4
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = -2
Query: 197 TSTRPGTGPXPLPVQ--TRHAPVLRANPYSEVTDPICRLPLP 78
T RPG GP PLP R P+ A + V P +P+P
Sbjct: 196 TRPRPGPGPLPLPSPPLPRMKPMAIAPTPAPVPAPTKMVPIP 237
>06_01_1057 + 8441881-8442278,8442464-8442548,8442637-8442867
Length = 237
Score = 27.1 bits (57), Expect = 7.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 138 RGVSGLDGKRXRTGAGSGRCSC 203
+G G G+R +T G GRC C
Sbjct: 22 QGREGRRGRRRQTDRGEGRCGC 43
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 27.1 bits (57), Expect = 7.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 368 RNRHDLTARKIRGR-PENAGPDPVRNVR 288
R +H TA ++ PEN GP PV + R
Sbjct: 238 RKQHKQTANSVQNTGPENVGPKPVNSPR 265
>11_01_0567 + 4469926-4470055,4470827-4470886,4471418-4471635
Length = 135
Score = 26.6 bits (56), Expect = 9.8
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = -2
Query: 200 RTSTRPGTGPXPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDML 33
R +T P P PV T HA + +P S P+ LP+ L + + DM+
Sbjct: 7 RPATCATARPPPPPVPTSHATTIVVDPDSTRRPPL--LPVDGLIIEINHVSCYDMI 60
>08_01_1056 +
10752363-10752503,10752711-10752771,10753483-10753620,
10754667-10754883,10755760-10755861,10756030-10756133,
10756383-10756483,10756563-10756607,10756724-10756855
Length = 346
Score = 26.6 bits (56), Expect = 9.8
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 184 PAPVRIRFPSKPDTPRSSEP 125
P P+ +RFP +P SS+P
Sbjct: 102 PVPIDLRFPDRPAMASSSDP 121
>03_02_0989 -
13006783-13007076,13007311-13007559,13010214-13010349,
13010777-13010995,13013796-13014174,13014365-13014496,
13015625-13015667
Length = 483
Score = 26.6 bits (56), Expect = 9.8
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 158 VQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH 48
++T A L+++P S+ R+PLP R+EAL+
Sbjct: 110 LETIIARNLKSSPLSQQVTRALRIPLPRTLKRIEALN 146
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,047,277
Number of Sequences: 37544
Number of extensions: 319592
Number of successful extensions: 1105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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