Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0101
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical ...    30   0.71 
AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical ...    30   0.71 
U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical...    28   3.8  
Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical p...    27   5.0  
Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical ...    27   6.6  

>AF067622-4|ABD63224.1|  338|Caenorhabditis elegans Hypothetical
           protein F33E11.6a protein.
          Length = 338

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 204 RTNIDQTRHRSXSASRPNPTRPGPQSQSL 118
           +TNI Q+R  S    +P  TRPGP   +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241


>AF067622-3|ABD63225.1|  447|Caenorhabditis elegans Hypothetical
           protein F33E11.6b protein.
          Length = 447

 Score = 30.3 bits (65), Expect = 0.71
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 204 RTNIDQTRHRSXSASRPNPTRPGPQSQSL 118
           +TNI Q+R  S    +P  TRPGP   +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241


>U64833-8|AAB04820.1|  432|Caenorhabditis elegans Hypothetical
           protein B0507.3 protein.
          Length = 432

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 184 PAPVRIRFPSKPDTPRSSEPILIPKLRI 101
           P P  ++  SKP TP  + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351


>Z81119-8|CAB03340.1|  504|Caenorhabditis elegans Hypothetical
           protein T10H4.10 protein.
          Length = 504

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 271 DTRENRLTFRTGSGPAFSGLPRIFLAVRSCRFRFVRDRHDSVRPPFN 411
           D    +L  R   G   +G   IF  VR    RF++ R D++  PFN
Sbjct: 200 DPEFEKLVSRLAKGFENTGFLDIFCPVRILESRFLKWRQDTIFEPFN 246


>AF022971-12|AAG23974.3|  229|Caenorhabditis elegans Hypothetical
           protein C31B8.1 protein.
          Length = 229

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 153 NPTRPGPQSQSLFRSYGSNLPTSLTYIILSTRGSSP 46
           +P +  P +Q LF S+G  LP      I +   SSP
Sbjct: 19  SPFKASPSNQKLFISFGVGLPIFFQMCIFTASYSSP 54


>Z54237-9|CAA90991.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 165 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRHAADMDTNR 13
           A  P P+ P P ++   +S   NLP S+   +   R G SP  W   A   TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>Z54235-11|CAA90978.1| 1424|Caenorhabditis elegans Hypothetical
           protein T11B7.4d protein.
          Length = 1424

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 165 ASRPNPTRPGPQSQSLFRSYGSNLPTSLTYIILSTR-GSSP--WRHAADMDTNR 13
           A  P P+ P P ++   +S   NLP S+   +   R G SP  W   A   TNR
Sbjct: 408 APPPVPSNPPPSNEQQSQSRVQNLPDSVRSAVSPRRSGKSPRQWPPPAMPTTNR 461


>Z81593-1|CAB04738.1|  608|Caenorhabditis elegans Hypothetical
           protein T20B3.1 protein.
          Length = 608

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 228 YFNIMRPQK--CIYLI*HSRKSSYVSDWIRTR 317
           Y   MRP    C Y I  SR S  VSDW+ +R
Sbjct: 550 YVAAMRPDGYGCFYRIGKSRISVAVSDWVSSR 581


>AC024843-6|AAF60844.3|  525|Caenorhabditis elegans Hypothetical
           protein Y61A9LA.3b protein.
          Length = 525

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 352 RSCRFRFVRDRHDSVRPPFNGQLRTGTDKGN 444
           ++ R +F +  H  + PP  G++R   D GN
Sbjct: 411 QAARIQFFQSLHTLIPPPIFGKMRKCVDSGN 441


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,282,321
Number of Sequences: 27780
Number of extensions: 246743
Number of successful extensions: 807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)